Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1290
(688 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 91 1e-19
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.21
SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein 5|... 28 1.5
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 27 2.5
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 27 3.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 26 5.9
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 25 7.8
SPBC21.07c |ppk24||serine/threonine protein kinase Ppk24|Schizos... 25 7.8
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 91.5 bits (217), Expect = 1e-19
Identities = 50/154 (32%), Positives = 82/154 (53%), Gaps = 1/154 (0%)
Frame = +3
Query: 84 TPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDH 263
+P + + T +K+ + EE + + E N + + +WL +RDA + +
Sbjct: 301 SPSVSGSASPTKSNKNGVLNREEKRRQRMEAFKKEN--NERYEWLLD--VRDADQNRVGD 356
Query: 264 PDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAVGVNELG 443
P+Y+PRTLY+PP + P +Q+W +K D V+FF+ GKFYELY DAA+G
Sbjct: 357 PNYDPRTLYIPPSAWATFKPFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAIGHQVFS 416
Query: 444 FSYM-KGDFAHSGFPESAYGRMASTLVSKGYKIA 542
+ + G PE+++ AS ++KGY+IA
Sbjct: 417 LKLTDRVNMKMVGIPEASFDYWASQFIAKGYRIA 450
Score = 50.0 bits (114), Expect = 3e-07
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2
Query: 557 QAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
Q+ N+ S+G+CFIDTS G FH+ +F DD H ++L T L P
Sbjct: 511 QSDNEEPSFGICFIDTSTGGFHMCEFTDDIHRTKLDTLLTQVRP 554
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 30.7 bits (66), Expect = 0.21
Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Frame = +3
Query: 363 DCVLFFKVGKFYELYHMDA-AVG-VNELGFS---YMKGDFAHSGFPESAYGRMASTLV 521
DCVL KVG FYE+Y A +G + L S K D + +GFP R LV
Sbjct: 76 DCVLLTKVGNFYEMYFEQAEKIGPLLNLRVSKKKTSKSDVSMAGFPFFKLDRYLKILV 133
>SPCC1259.14c |meu27||S. pombe specific UPF0300 family protein
5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 736
Score = 27.9 bits (59), Expect = 1.5
Identities = 16/51 (31%), Positives = 22/51 (43%)
Frame = +3
Query: 72 EPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKP 224
EP PKS +N T + L ++ KS + S N + KL KP
Sbjct: 70 EPQVEPKSIENNYTLKKKNEEGFLSQQENKSSNQNPSKANNLFDKLGVSKP 120
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 27.1 bits (57), Expect = 2.5
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 139 YYLKKTQRARRKSHQMVIGCTAS*TG*SQTRSEMR*RGNRTIQI 270
Y+L Q +RKSH V+ C S Q ++ G R +++
Sbjct: 429 YHLATMQSRKRKSHSPVLVCAPSNVAVDQLAEKIHRTGLRVVRV 472
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -1
Query: 262 WSGFLFIASLILSGFNQSNLQCTQLPSDDSSSWLFGFSSGNIVFDFD 122
W FL I G N+ QLP + ++L S+ N +F+FD
Sbjct: 240 WRFFLSILRNSPWGPNKERKFWNQLPDREKETFLNNLSNANGIFNFD 286
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 87 PKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGN 191
P S + T SKS T LPE NP S E+++S+G+
Sbjct: 384 PISIAEEEPTIDSKSPT-LPEHNPLS-EDDTSNGD 416
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +3
Query: 66 KYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGN 191
KY KS+ T GS S T K +EEE++ G+
Sbjct: 1216 KYNRKAPTKSSTRQTTLDGSISNTKKSSRTKKKKEEETNRGD 1257
>SPBC21.07c |ppk24||serine/threonine protein kinase
Ppk24|Schizosaccharomyces pombe|chr 2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 275 SEDSVCSTGFLKKSDTCSSTMVDNE 349
S DS+ T +++K D CS+ D+E
Sbjct: 406 SLDSILGTAWVRKLDCCSNFSTDHE 430
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,960,502
Number of Sequences: 5004
Number of extensions: 65365
Number of successful extensions: 211
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -