Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1290
(688 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0072 + 14323449-14324274,14324351-14324447,14325175-143252... 101 7e-22
01_01_0571 - 4233769-4234239,4234340-4234378,4234712-4234839,423... 99 3e-21
10_08_0911 - 21499196-21499236,21499368-21499488,21499665-214997... 30 1.5
05_03_0612 - 16177362-16178102,16178404-16178539,16180612-161806... 30 1.5
11_01_0374 - 2843405-2843508,2844134-2844239,2844327-2844409,284... 29 3.5
04_01_0058 + 592846-593185,594641-595182,596298-596987,597078-59... 29 3.5
07_03_1606 + 28111158-28111328,28111431-28111549,28111984-281120... 29 4.6
01_06_0496 - 29795490-29796638,29796811-29796870,29798168-297983... 28 6.0
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 28 6.0
02_05_0889 - 32532495-32533832,32533919-32534151,32534321-325344... 28 8.0
>09_04_0072 +
14323449-14324274,14324351-14324447,14325175-14325277,
14325359-14325412,14325495-14325569,14325597-14325650,
14325687-14325755,14325840-14325923,14326115-14326312,
14326428-14326927,14327011-14327140,14328226-14328317,
14328776-14328954,14329114-14329316,14329398-14329499,
14330047-14330209,14330690-14330979,14331088-14331225,
14331311-14331390,14331510-14331606,14331685-14331814,
14331921-14332162
Length = 1301
Score = 101 bits (241), Expect = 7e-22
Identities = 53/120 (44%), Positives = 66/120 (55%), Gaps = 18/120 (15%)
Frame = +3
Query: 234 RDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHM 413
+DA R+P +P+Y+PRTL +P FL S T +QWW KS + D VLFFK+GKFYEL+ M
Sbjct: 311 KDAKGRRPGNPNYDPRTLSLPSQFLNSLTGGQRQWWEFKSQHMDKVLFFKMGKFYELFEM 370
Query: 414 DAAVGVNELGFSYMK------------------GDFAHSGFPESAYGRMASTLVSKGYKI 539
DA VG EL YMK GD H GFPE + L KGY++
Sbjct: 371 DAHVGAKELDLQYMKYTAVTAQSSFCFNSYGITGDKPHCGFPEKNFELNLEKLAKKGYRV 430
Score = 36.7 bits (81), Expect = 0.017
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 539 SFAVAEQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
S+ + D + GVC +D S F +GQF+DD L + L+ P
Sbjct: 490 SYQCGSEKDQDGHTIGVCIVDVSTSKFIVGQFQDDAERHGLCSILSEIRP 539
>01_01_0571 -
4233769-4234239,4234340-4234378,4234712-4234839,
4235329-4235470,4235519-4235905,4236045-4236230,
4236382-4236659,4236757-4236883,4237270-4237442,
4237610-4237657,4237734-4237767,4237837-4237965,
4238865-4238960,4239419-4239485,4240030-4240085,
4240522-4240617,4241127-4242222,4243221-4243402
Length = 1244
Score = 99.1 bits (236), Expect = 3e-21
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 3/161 (1%)
Frame = +3
Query: 66 KYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAM 245
+ + +Q +N + G K + +P + K +WL P IRDA
Sbjct: 320 RVQEDQRVTTNDSCSPFWGPNKKVKPAQCSPVENKVHDEMAESARSKFEWLNPSNIRDAN 379
Query: 246 KRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAAV 425
+R+ P Y+ TL++PPD L+ + + +Q+W +K D VLFFKVGKFYELY +DA +
Sbjct: 380 RRRLADPLYDKTTLFIPPDALRKMSTSQKQYWNIKCKYMDVVLFFKVGKFYELYEVDAEI 439
Query: 426 GVNELGFSYM---KGDFAHSGFPESAYGRMASTLVSKGYKI 539
G EL + G G ES L+++GYK+
Sbjct: 440 GQKELDWKMTISGVGKCRQVGISESGIDVAVEKLLARGYKV 480
>10_08_0911 -
21499196-21499236,21499368-21499488,21499665-21499789,
21500187-21500418,21500488-21500668,21501342-21501438,
21501641-21501779,21502024-21502351,21502890-21503137,
21503270-21503543,21504200-21504291,21504451-21504521,
21505091-21505181,21506526-21507380,21507482-21507594,
21508007-21508074,21508655-21508835,21509084-21509186,
21509273-21509379,21510046-21511584,21511661-21511771,
21511856-21511908,21511988-21512063,21512147-21512366,
21512477-21512901,21513193-21513372,21513503-21515474
Length = 2680
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = +3
Query: 78 NQTPKSNKNTKTTAGSKSKTILPEENPKSQ---EEESSDGNWVHCKLDWLKPDKIRD 239
++T SN +KT+ I+P EN KSQ E + D + + +L+ ++P + D
Sbjct: 134 SKTDPSNMPSKTSDSPTGNIIVPAENDKSQSTRSEMAEDPSRIQPQLEHIRPFSVDD 190
>05_03_0612 -
16177362-16178102,16178404-16178539,16180612-16180658,
16181002-16181082,16181765-16181846,16181924-16182036,
16182349-16182456,16182531-16182642,16182738-16182847,
16183105-16183242,16183370-16183834
Length = 710
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/39 (38%), Positives = 18/39 (46%)
Frame = +3
Query: 240 AMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKST 356
A RK H Y YV D + TP HQ W + K+T
Sbjct: 497 AFTRKKQHRKYGS---YVKADKAEPHTPVHQNWVVYKAT 532
>11_01_0374 -
2843405-2843508,2844134-2844239,2844327-2844409,
2844886-2845078,2845527-2845662,2846185-2846264,
2846348-2846932,2847058-2847126,2847203-2847347,
2847442-2847542,2848208-2849066,2849397-2849536,
2849606-2849783,2849885-2850287,2850770-2850833,
2851223-2851278,2851470-2851572
Length = 1134
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +3
Query: 66 KYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDA- 242
KY N SN+N ++T + S ++ +E + E + ++G+ V C + I +
Sbjct: 485 KYMVNLMQGSNRNAQSTYVTGSHPLVSQEWQDTDEAKPNEGSQVDCSSTEKPCETINNTK 544
Query: 243 --MKRKPDHPDYNPRTL 287
+KR PD R L
Sbjct: 545 AQLKRSNSTPDIEKRYL 561
>04_01_0058 +
592846-593185,594641-595182,596298-596987,597078-597233,
597277-597856,598601-598764,598907-599100,599702-599750,
599777-599806
Length = 914
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 72 EPNQTPKSNKNTKTTAGSK-SKTILPEENPKSQEEESSD 185
EPN T S+KNT+ + +K SK P+ PK D
Sbjct: 630 EPNTTSTSSKNTRKLSNAKESKDESPQVEPKPSSANDCD 668
>07_03_1606 +
28111158-28111328,28111431-28111549,28111984-28112024,
28112654-28112713,28112812-28112858,28112939-28113133,
28113236-28113282,28113363-28113429,28113521-28113621,
28113725-28113826,28113904-28114042,28114120-28114182,
28114323-28114406,28114981-28115295
Length = 516
Score = 28.7 bits (61), Expect = 4.6
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = +3
Query: 369 VLFFKVGKFYELYHMDAAVGVNELG-FSYMKGDFAHSGFPESAYGRMASTLVSKGYKIAS 545
++ F + ++L H+DAAV + LG F Y+ F S F G +++ ++ K Y I
Sbjct: 172 IVLFNALQNFDLVHIDAAVVLKFLGNFFYL---FLSSTFLGVFAGLLSAYIIKKLY-IGR 227
Query: 546 RWLNRHIMIQAVMEFVS 596
+R + + +M ++S
Sbjct: 228 HSTDREVALMMLMAYLS 244
>01_06_0496 -
29795490-29796638,29796811-29796870,29798168-29798371,
29798739-29798984,29799375-29799464
Length = 582
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/50 (34%), Positives = 25/50 (50%)
Frame = +3
Query: 147 EENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPDYNPRTLYVP 296
+E P+S+EE S+GN LK K R + K D+P+ + VP
Sbjct: 475 KEKPRSKEEPLSNGN--------LKTSKRRSSFSTKSDYPENGAQNTPVP 516
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 28.3 bits (60), Expect = 6.0
Identities = 20/58 (34%), Positives = 25/58 (43%)
Frame = +3
Query: 99 KNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPDY 272
K K A SK K +EE G W +L + +PD +D M RK D DY
Sbjct: 410 KLQKFKASFLSKNPATGNTEKKTDEEDYTG-WHSNRLTF-EPDSSKDGMTRKDDPDDY 465
>02_05_0889 -
32532495-32533832,32533919-32534151,32534321-32534461,
32534564-32535521
Length = 889
Score = 27.9 bits (59), Expect = 8.0
Identities = 21/93 (22%), Positives = 33/93 (35%)
Frame = +3
Query: 105 TKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPDYNPRT 284
TKT K + L E+P ++ G W+ + + +KR P N T
Sbjct: 456 TKTCRPHKGEIGLVFEHPTQPGNQA--GGWMARQKHLETSESAVSTLKRSTSTPFLNTAT 513
Query: 285 LYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFK 383
++ T W I+ +DC F K
Sbjct: 514 TQYTMSEVRRHTTPESAWIIVHGHVYDCTGFLK 546
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,910,420
Number of Sequences: 37544
Number of extensions: 405191
Number of successful extensions: 1130
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1744894544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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