Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1290
         (688 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   3e-06
SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)                      33   0.16 
SB_43196| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.29 
SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)                  32   0.50 
SB_42040| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_1060| Best HMM Match : Tropomyosin (HMM E-Value=8.5)                30   1.5  
SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_42364| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_48132| Best HMM Match : CLN3 (HMM E-Value=5.9e-09)                  28   6.2  
SB_42041| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)                 28   8.1  
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                  28   8.1  

>SB_17045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1146

 Score = 49.2 bits (112), Expect = 3e-06
 Identities = 22/34 (64%), Positives = 24/34 (70%)
 Frame = +3

Query: 381 KVGKFYELYHMDAAVGVNELGFSYMKGDFAHSGF 482
           +VGKFYELYHMDA  GV EL   YMK   A+S F
Sbjct: 253 EVGKFYELYHMDATTGVKELNLIYMKVHIAYSTF 286


>SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)
          Length = 456

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 16/39 (41%), Positives = 21/39 (53%)
 Frame = +3

Query: 81  QTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWV 197
           Q  KS KN+K +AGSK  +  P  NP  + +    G WV
Sbjct: 253 QLLKSRKNSKESAGSKIGSPCPPSNPSCKSDILLPGKWV 291


>SB_43196| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +3

Query: 243 MKRKPDHPDYNPRTLYVPPDFLKSQTPAH 329
           ++ KP HPDY  R    PPD+   + P H
Sbjct: 68  VREKPTHPDYGGRGKLGPPDYGAKEKPTH 96


>SB_14000| Best HMM Match : DUF1213 (HMM E-Value=0.71)
          Length = 1281

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +3

Query: 54   QDSFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCK 206
            QD     P Q  ++++ TKT+    SKT  P++  K ++ +  D     CK
Sbjct: 1118 QDKHAARPRQARQASRKTKTS--KTSKTSKPQDQDKQEKRDKQDKQGASCK 1166


>SB_42040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 219 KPDKIR---DAMKRKPDHPDYNPRTLYVPPDFLKSQTPAH 329
           KPD +    D +  KPDH +  P  LY  PD L ++ P H
Sbjct: 270 KPDHLNNKPDHLNNKPDHLNNKPNHLYYKPDHLNNK-PNH 308


>SB_1060| Best HMM Match : Tropomyosin (HMM E-Value=8.5)
          Length = 430

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +3

Query: 219 KPDKIR---DAMKRKPDHPDYNPRTLYVPPDFLKSQTPAH 329
           KPD +    D +  KPDHP+  P  L   PD L +Q P H
Sbjct: 155 KPDHLNNKPDHLNNKPDHPNNKPDHLNNKPDHLYNQ-PDH 193



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +3

Query: 237 DAMKRKPDHPDYNPRTLYVPPDFLKSQTPAH 329
           D +K KPDH  Y P  L   PD L ++ P H
Sbjct: 262 DHLKYKPDHLKYKPNHLKYKPDHLNNK-PDH 291



 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
 Frame = +3

Query: 219 KPDKIR---DAMKRKPDHPDYNPRTLYVPPDFLKSQTPAH 329
           KPD +    D +  KPDH D  P  L   PD L ++ P H
Sbjct: 288 KPDHLNNRPDHLYNKPDHQDNKPNHLDNEPDHLNNK-PDH 326


>SB_24368| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1045

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +3

Query: 96  NKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWL-KPDKIRDAMKRKPDHPDY 272
           NKN KT     +K I  +ENP S+EE  +  +     L    KP+K     +    H   
Sbjct: 295 NKNDKTDGAKTAKKINIKENPLSEEESGAPYHSYQVPLSAPDKPEKTGGCSECDEPHIYA 354

Query: 273 NPRTLYVPP 299
            P     PP
Sbjct: 355 APSNYQEPP 363


>SB_42364| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +3

Query: 255 PDHPDYNPRTLYVPPDFLKSQTPAHQQWWI--MKSTNFDCVLFFKVGKFYELYHM 413
           P  PDY+P   Y P  +L ++      WW+  ++      VL F V  +Y + H+
Sbjct: 20  PGQPDYDPNLPYGPKVYL-ARKKKPDPWWVTCIEVAVVVGVLLFFVYMYYYMEHL 73


>SB_48132| Best HMM Match : CLN3 (HMM E-Value=5.9e-09)
          Length = 357

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 426 GVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIASRWLNRHIMIQAVMEFVS 596
           GV E+ F  +   F H      + G  A  +++  Y     W + +++IQAV+  +S
Sbjct: 130 GVGEVSFLGLTTYFHHIALSAYSAGTGAGFVLAPLYYTVLAWFSEYLIIQAVITTIS 186


>SB_42041| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 225 DKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAH 329
           +K  D +  KPDH +  P  LY  PD L ++ P H
Sbjct: 237 NKKPDHLNNKPDHLNNEPDQLYNEPDHLNNK-PDH 270


>SB_25972| Best HMM Match : MIF4G (HMM E-Value=4.9e-40)
          Length = 1265

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +3

Query: 108 KTTAGSKS---KTILPEENPKSQEEESSDGNWVHCKLDWL 218
           K +AG+K    +TIL  +  K  E+E +D N +H K+D L
Sbjct: 811 KVSAGNKELVFRTILLNKCQKEFEKEKTDENRIHEKIDQL 850


>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 1151

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = +3

Query: 54  QDSFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESS-DGNWVHCKLDWLKPDK 230
           +D+    PNQ+  S+K  K     + K      N +  E+ESS +   +    D +KP K
Sbjct: 226 EDATLASPNQSNDSDKENKERCKHRDKQAPSVSNRRKNEKESSEETESIELPSDVIKPTK 285


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,817,738
Number of Sequences: 59808
Number of extensions: 469921
Number of successful extensions: 1628
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1619
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1781448916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)