Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1290
(688 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom... 155 3e-38
Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical pr... 31 1.0
Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical pr... 30 1.3
AC087081-1|AAG37978.3| 300|Caenorhabditis elegans Hypothetical ... 30 1.3
Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical pr... 29 2.4
U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned expre... 29 3.1
U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned expre... 29 3.1
AC024791-31|AAF60655.1| 181|Caenorhabditis elegans Hypothetical... 29 3.1
Z50176-3|CAA90540.1| 196|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z81485-6|CAB03979.1| 784|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z71264-5|CAA95829.1| 241|Caenorhabditis elegans Hypothetical pr... 28 7.2
Z71178-12|CAD44086.1| 342|Caenorhabditis elegans Hypothetical p... 28 7.2
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 28 7.2
AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical... 28 7.2
Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical p... 27 9.5
Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical p... 27 9.5
Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical pr... 27 9.5
>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
homolog) family protein 6 protein.
Length = 1186
Score = 155 bits (376), Expect = 3e-38
Identities = 65/115 (56%), Positives = 83/115 (72%)
Frame = +3
Query: 198 HCKLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLF 377
H D+LKPDKIRD KR P+Y+P+TL+VPPDF + QTP H+QWW MKS +FD +L
Sbjct: 211 HESFDFLKPDKIRDGFKRPMSDPEYDPKTLWVPPDFHQKQTPGHRQWWTMKSQHFDTILL 270
Query: 378 FKVGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKIA 542
FKVGKFYE YHMDA V L ++M+G +AH+GFPE A + A L++ GYK+A
Sbjct: 271 FKVGKFYETYHMDAVEVVRALNIAFMRGSYAHAGFPEHAASKFADQLMNHGYKVA 325
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
Frame = +2
Query: 515 SSIERLQNSFAVAEQAHNDS---SSYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAH 679
S+++ ++ HN SSYGVC IDT+ +GQFEDD + S+L T LA+
Sbjct: 378 STLDPTAKHLLAIKEFHNPETGKSSYGVCMIDTTTAHIRIGQFEDDDYRSQLRTLLAN 435
>Z66563-2|CAA91469.3| 2557|Caenorhabditis elegans Hypothetical protein
F46C3.3 protein.
Length = 2557
Score = 30.7 bits (66), Expect = 1.0
Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Frame = +3
Query: 72 EPNQTPKSNKNTKTTAGSKS-KTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMK 248
E N+T +S ++ + A +T+ PEEN K E + + P R
Sbjct: 1143 EDNETSESEEDDEDAANRVGYETVRPEENMKMMETIQDHSHILK------SPVLPRKTYS 1196
Query: 249 RKPDHPDYNPRTLYVPPDFLKSQTPAHQQW 338
R H +Y P PP F Q Q+
Sbjct: 1197 RNEQHEEYTPMNFAPPPTFTYPQQMPMMQY 1226
>Z70780-6|CAA94823.1| 614|Caenorhabditis elegans Hypothetical
protein F46B6.7 protein.
Length = 614
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +3
Query: 75 PNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGN 191
PN PK N +T+++ GSK+ N K S +G+
Sbjct: 23 PNANPKKNADTESSGGSKNNRQRRRSNTKGDGSNSRNGS 61
>AC087081-1|AAG37978.3| 300|Caenorhabditis elegans Hypothetical
protein Y82E9BL.13 protein.
Length = 300
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -1
Query: 196 TQLPSDDSSSWLFGFSSGNIVFDFD 122
T+LPSDD+ F +SSGN F F+
Sbjct: 265 TELPSDDTIKSKFEYSSGNSKFSFE 289
>Z83228-2|CAB05733.1| 370|Caenorhabditis elegans Hypothetical
protein F52F12.2 protein.
Length = 370
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 51 LQDSFKYEPNQTPKSN--KNTKTTAGSKSKTILPEENPKSQEE 173
+ D+F P P S +T T + T+LP +PKS+EE
Sbjct: 288 ISDTFIASPTLLPPSTTLSSTPPTISPSAPTLLPTRSPKSREE 330
>U29379-7|ABC71826.1| 710|Caenorhabditis elegans Patterned
expression site protein22, isoform c protein.
Length = 710
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 449 GESKFIDPNSSIHVIQFIEFTNFEEQYTIKIG*FHYPPLLM 327
GES F + + I + + TN+ QY+I +G PLL+
Sbjct: 26 GESNFEEDDQDIGSLNDGQLTNYSSQYSINMGVQQVEPLLV 66
>U29379-5|ABC71825.1| 777|Caenorhabditis elegans Patterned
expression site protein22, isoform b protein.
Length = 777
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 449 GESKFIDPNSSIHVIQFIEFTNFEEQYTIKIG*FHYPPLLM 327
GES F + + I + + TN+ QY+I +G PLL+
Sbjct: 26 GESNFEEDDQDIGSLNDGQLTNYSSQYSINMGVQQVEPLLV 66
>AC024791-31|AAF60655.1| 181|Caenorhabditis elegans Hypothetical
protein Y47G6A.3 protein.
Length = 181
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 66 KYEPNQTPKSNKNTKTTAGSK-SKTILPEENPKSQEEESSDGNWVHCKLD 212
K E +TPK++KN+KT +K K PKS ++ + V KL+
Sbjct: 127 KEEDAKTPKNSKNSKTPKKAKMPKNAKTPRTPKSSASKTPKASTVSGKLE 176
>Z50176-3|CAA90540.1| 196|Caenorhabditis elegans Hypothetical
protein C09G1.3 protein.
Length = 196
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +3
Query: 81 QTPKSNKNTKTTAGSK-SKTILPEENPKSQE--EESSDGNWVHCK-LDWLKPDKIRDAMK 248
+T ++N+ KT +T + N K+ E ++ SD ++ CK +DW + ++ D++K
Sbjct: 9 RTKRNNEEQKTEEHQDVQETRILTYNQKNAESLQQVSDEVFMSCKVIDWAESSRVADSLK 68
Query: 249 R 251
R
Sbjct: 69 R 69
>Z81485-6|CAB03979.1| 784|Caenorhabditis elegans Hypothetical
protein C49F5.6 protein.
Length = 784
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +3
Query: 78 NQTPKSNKNTKTTA---GSKSKTILPEENPKSQE 170
N++P SNKN +TTA G +S PE P + E
Sbjct: 536 NKSPTSNKNVQTTAVTSGFQSNEQAPENLPATME 569
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +3
Query: 87 PKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKP-DKIRDAMKRKP 257
P+ NT+TT +K + I EE+ +EE+ D H ++ KP +++ + K P
Sbjct: 2018 PRLASNTETTTEAKVENIDVEESEDDEEEDGED-FVAHLQMKPNKPVNQVEELAKSSP 2074
>Z71264-5|CAA95829.1| 241|Caenorhabditis elegans Hypothetical
protein K07G5.2 protein.
Length = 241
Score = 27.9 bits (59), Expect = 7.2
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +3
Query: 201 CKLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQW 338
C LD KP K+R K+ P +P Y LY+ H W
Sbjct: 119 CDLDLRKP-KLRYWAKKNPHNPRYGDMKLYLKCQIETRVLEVHGSW 163
>Z71178-12|CAD44086.1| 342|Caenorhabditis elegans Hypothetical
protein B0024.15 protein.
Length = 342
Score = 27.9 bits (59), Expect = 7.2
Identities = 18/66 (27%), Positives = 31/66 (46%)
Frame = +2
Query: 470 TLWLP*KRLRTYGFDSSIERLQNSFAVAEQAHNDSSSYGVCFIDTSIGLFHLGQFEDDKH 649
T++L R+R+Y D+ I + NSF+ D S+ F+ QF+D H
Sbjct: 18 TVFLNLDRIRSYSTDAPIFEVTNSFSSKSHLSKDGST----------NQFYHAQFKDQNH 67
Query: 650 SSRLLT 667
+ + +T
Sbjct: 68 TYQFIT 73
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/68 (29%), Positives = 35/68 (51%)
Frame = +3
Query: 51 LQDSFKYEPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDK 230
+ ++ K +P + KSNK+ K GSK K+ E++ K + EE + D L ++
Sbjct: 76 VDEAKKPDPANSKKSNKSKKPEKGSK-KSKKSEKSKKKKTEEKVMSEDKPERPDKLTEEE 134
Query: 231 IRDAMKRK 254
DA ++K
Sbjct: 135 KPDAKEKK 142
>AF078790-14|AAC26930.1| 335|Caenorhabditis elegans Hypothetical
protein F36H12.3 protein.
Length = 335
Score = 27.9 bits (59), Expect = 7.2
Identities = 21/96 (21%), Positives = 36/96 (37%)
Frame = +3
Query: 99 KNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKRKPDHPDYNP 278
K K + K EE + ++EE + K + K +K D K +P + P
Sbjct: 166 KEEKKDDKEEKKEEKKEEKKEEKKEEKKEEKKEEEKKEEKKEEKKEDEKKVEPKPGEPKP 225
Query: 279 RTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKV 386
PP L + +Q + + D + FK+
Sbjct: 226 HISIEPPGDLMFKADQQEQKKLTLTNTHDKKIMFKI 261
>Z83241-5|CAH10791.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 72 EPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSD 185
EP + P+ K +K + K K +P+ P+S++EE+ +
Sbjct: 709 EPEEEPEPVKKSKRSL-KKVKVAVPDPAPESKDEENEE 745
>Z83241-4|CAB05819.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 72 EPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSD 185
EP + P+ K +K + K K +P+ P+S++EE+ +
Sbjct: 707 EPEEEPEPVKKSKRSL-KKVKVAVPDPAPESKDEENEE 743
>Z81120-11|CAH10815.1| 1183|Caenorhabditis elegans Hypothetical
protein T12D8.9b protein.
Length = 1183
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 72 EPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSD 185
EP + P+ K +K + K K +P+ P+S++EE+ +
Sbjct: 709 EPEEEPEPVKKSKRSL-KKVKVAVPDPAPESKDEENEE 745
>Z81120-10|CAB03350.3| 1181|Caenorhabditis elegans Hypothetical
protein T12D8.9a protein.
Length = 1181
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +3
Query: 72 EPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSD 185
EP + P+ K +K + K K +P+ P+S++EE+ +
Sbjct: 707 EPEEEPEPVKKSKRSL-KKVKVAVPDPAPESKDEENEE 743
>Z69717-1|CAA93531.1| 1391|Caenorhabditis elegans Hypothetical protein
E01G6.1 protein.
Length = 1391
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = -1
Query: 310 FKKSGGTYRVLGL*SGWSGFLFIASLILSGFNQSNLQCTQLPSDDSSSWLF 158
F GG G + SG + S L GFNQ +C+Q P D S +F
Sbjct: 1103 FNMGGGAVPGFGNQASQSGCP-LGSRPLIGFNQQITECSQQPCPDGFSCVF 1152
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,344,885
Number of Sequences: 27780
Number of extensions: 361625
Number of successful extensions: 1182
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -