Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1290
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              25   0.68 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.3  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.3  

>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 25.0 bits (52), Expect = 0.68
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 49  NFKTVLNMNQIKPQKVTRIPKLLLDQN 129
           NF  +   N  KPQ +  + +LL+D+N
Sbjct: 69  NFNILDKNNVFKPQGIKAVMELLIDEN 95


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 270 YNPRTLYVPPDFLKSQTPAHQQWW 341
           +N   LYVPP   KS       W+
Sbjct: 95  HNGSCLYVPPGIFKSTCKIDITWF 118


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 270 YNPRTLYVPPDFLKSQTPAHQQWW 341
           +N   LYVPP   KS       W+
Sbjct: 163 HNGSCLYVPPGIFKSTCKIDITWF 186


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 270 YNPRTLYVPPDFLKSQTPAHQQWW 341
           +N   LYVPP   KS       W+
Sbjct: 163 HNGSCLYVPPGIFKSTCKIDITWF 186


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 99  KNTKTTAGSKSKTILPEE 152
           K+T TTA  K  TI PE+
Sbjct: 142 KSTTTTAEVKRDTINPED 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 199,740
Number of Sequences: 438
Number of extensions: 4896
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)