Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1290
         (688 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...   124   6e-29
At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH...   106   1e-23
At2g21450.1 68415.m02552 SNF2 domain-containing protein / helica...    31   0.54 
At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,...    29   2.9  
At3g42790.1 68416.m04474 PHD finger family protein contains PHD-...    29   2.9  
At3g10660.1 68416.m01282 calcium-dependent protein kinase isofor...    29   2.9  
At3g03680.1 68416.m00371 C2 domain-containing protein contains I...    28   5.0  
At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identic...    27   8.8  

>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score =  124 bits (299), Expect = 6e-29
 Identities = 56/112 (50%), Positives = 74/112 (66%)
 Frame = +3

Query: 204 KLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFK 383
           K  +L  D+ RDA +R+P   +Y+PRTLY+PPDF+K  T   +QWW  K+ + D V+FFK
Sbjct: 343 KFRFLGVDR-RDAKRRRPTDENYDPRTLYLPPDFVKKLTGGQRQWWEFKAKHMDKVVFFK 401

Query: 384 VGKFYELYHMDAAVGVNELGFSYMKGDFAHSGFPESAYGRMASTLVSKGYKI 539
           +GKFYEL+ MDA VG  EL   YMKG+  H GFPE  +      LV KGY++
Sbjct: 402 MGKFYELFEMDAHVGAKELDIQYMKGEQPHCGFPEKNFSVNIEKLVRKGYRV 453



 Score = 32.3 bits (70), Expect = 0.31
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 578 SYGVCFIDTSIGLFHLGQFEDDKHSSRLLTTLAHYPP 688
           ++GVC +D +     LGQF+DD+  S L   L+   P
Sbjct: 525 NFGVCLVDVATQKIILGQFKDDQDCSALSCLLSEMRP 561


>At3g24495.1 68416.m03072 DNA mismatch repair protein MSH6-2 (MSH7)
           identical to SP|Q9SMV7 DNA mismatch repair protein
           MSH6-2 (AtMsh6-2) (MutS homolog 7) {Arabidopsis
           thaliana}; GC donor splice site at exon 11
          Length = 1109

 Score =  106 bits (255), Expect = 1e-23
 Identities = 49/115 (42%), Positives = 70/115 (60%), Gaps = 3/115 (2%)
 Frame = +3

Query: 204 KLDWLKPDKIRDAMKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFK 383
           K +WL+  +IRDA +R+PD P Y+ +TL++PPD  K  + + +Q+W +KS   D VLFFK
Sbjct: 230 KFEWLESSRIRDANRRRPDDPLYDRKTLHIPPDVFKKMSASQKQYWSVKSEYMDIVLFFK 289

Query: 384 VGKFYELYHMDAAVGVNELGFSYMK---GDFAHSGFPESAYGRMASTLVSKGYKI 539
           VGKFYELY +DA +G  EL +       G     G  ES        L+++GYK+
Sbjct: 290 VGKFYELYELDAELGHKELDWKMTMSGVGKCRQVGISESGIDEAVQKLLARGYKV 344


>At2g21450.1 68415.m02552 SNF2 domain-containing protein / helicase
           domain-containing protein low similarity to SP|Q61687
           Transcriptional regulator ATRX {Mus musculus}; contains
           PFam profiles PF00271: Helicase conserved C-terminal
           domain, PF00176: SNF2 family N-terminal domain
          Length = 816

 Score = 31.5 bits (68), Expect = 0.54
 Identities = 20/44 (45%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +3

Query: 126 KSKTILPEENPKSQEEESSDGNWVHCKLD-WLKPDKIRDAMKRK 254
           K K+ L EENP + E+  SD N    KLD  LK   +RD +K K
Sbjct: 581 KLKSFL-EENPSNGEKGFSDNNTTVMKLDKMLKKINVRDGVKMK 623


>At5g13540.2 68418.m01564 expressed protein HERC2 - Homo sapiens,
           EMBL:AF071172; isoform contains non-consensus GG
           acceptor splice site at intron 6
          Length = 788

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +3

Query: 111 TTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKP 224
           T AGSK+  + P E    +EEE   G+WV  K     P
Sbjct: 639 TPAGSKTWMLDPSEVETIEEEELKIGDWVRVKASITTP 676


>At3g42790.1 68416.m04474 PHD finger family protein contains
           PHD-finger domain, INTERPRO:IPR001965
          Length = 250

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 90  KSNKNTKTTAGSKSKTILPEENPKSQEEESSD 185
           KSN   +T+ G  SKT  P+E  +  +E+  D
Sbjct: 159 KSNSKVRTSEGKSSKTKQPKEEDEEIDEDDED 190


>At3g10660.1 68416.m01282 calcium-dependent protein kinase isoform 2
           (CPK2) identical to calcium-dependent protein kinase
           isoform 2 [Arabidopsis thaliana] gi|9837343|gb|AAG00535;
           contains protein kinase domain, Pfam:PF00069; contains
           EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
           INTERPRO:IPR002048
          Length = 646

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 28/131 (21%), Positives = 51/131 (38%), Gaps = 1/131 (0%)
 Frame = +3

Query: 66  KYEPN-QTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDA 242
           K +P+ +     K  K  A    + ++PEE+ +    E S    V  + +  KP+  +  
Sbjct: 76  KLKPDLEIQPEEKKEKVLAEETKQKVVPEESKQEVPPEESKREVV-VQPESAKPET-KSE 133

Query: 243 MKRKPDHPDYNPRTLYVPPDFLKSQTPAHQQWWIMKSTNFDCVLFFKVGKFYELYHMDAA 422
            K +   P+    T   P    + Q P H +         + VL  K   F E Y +   
Sbjct: 134 SKPETTKPETTSETK--PETKAEPQKPKHMRRVSSAGLRTESVLQRKTENFKEFYSLGRK 191

Query: 423 VGVNELGFSYM 455
           +G  + G +++
Sbjct: 192 LGQGQFGTTFL 202


>At3g03680.1 68416.m00371 C2 domain-containing protein contains
           INTERPRO:IPR000008 C2 domain
          Length = 1017

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 3/86 (3%)
 Frame = +3

Query: 72  EPNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKLDWLKPDKIRDAMKR 251
           +P +  K+    K T  +K++    +E  K +EE+  +      K D  KPD   D   +
Sbjct: 157 KPPEIAKAEDGKKETEAAKTEE--KKEGDKKEEEKPKE----EAKPDEKKPDAPPDTKAK 210

Query: 252 KPD---HPDYNPRTLYVPPDFLKSQT 320
           KPD    P   P  +  PP   K++T
Sbjct: 211 KPDTAVAPPPPPAEVKNPPIPQKAET 236


>At4g37000.1 68417.m05242 accelerated cell death 2 (ACD2) identical
           to accelerated cell death 2 (ACD2) GI:12484129 from
           [Arabidopsis thaliana]
          Length = 319

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +3

Query: 75  PNQTPKSNKNTKTTAGSKSKTILPEENPKSQEEESSDGNWVHCKL 209
           P   P   +N     GS   ++      KS   +   G+W+HCK+
Sbjct: 83  PCNLPPDVRNFNNPNGSAEASLHIRSGDKSSPIDFVIGSWIHCKI 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,520,491
Number of Sequences: 28952
Number of extensions: 342522
Number of successful extensions: 1090
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1048
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1088
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1457719448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)