Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1289
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    27   0.19 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    24   1.0  
AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan oxyge...    22   4.2  
AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.2  
AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan oxyge...    22   4.2  
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       21   9.7  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   9.7  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    21   9.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.7  

>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 182 SPPLRPCSALLSASSNMSCCEPEAPAPASCENVMPVSIST 63
           SPP  P SA    SS+       AP PA+  +  P S+++
Sbjct: 10  SPPPAPQSAATPISSSGMTSPAAAPPPATTSSGSPASVAS 49


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -3

Query: 680 KARRCCRYSCKSVMLVFTETLFSHSNSAHICLKS 579
           K R+ CR     ++ ++  T+ + S + H+C  S
Sbjct: 33  KYRKFCRILKYFIIAIYVLTILTSSVTLHVCFNS 66


>AY052394-1|AAL15468.1|  228|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 228

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 13  LLEDVDKEREPKRQEQKVEIETGITFSQLAGAGASGSQH 129
           LL D+D      R    + ++  I  SQL   G+SG Q+
Sbjct: 134 LLMDIDSLITKWRYNHVLMVQRMIGSSQLGTGGSSGYQY 172


>AY052392-1|AAL15466.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 13  LLEDVDKEREPKRQEQKVEIETGITFSQLAGAGASGSQH 129
           LL D+D      R    + ++  I  SQL   G+SG Q+
Sbjct: 294 LLMDIDSLITKWRYNHVLMVQRMIGSSQLGTGGSSGYQY 332


>AY052390-1|AAL15464.1|  388|Tribolium castaneum tryptophan
           oxygenase protein.
          Length = 388

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 13  LLEDVDKEREPKRQEQKVEIETGITFSQLAGAGASGSQH 129
           LL D+D      R    + ++  I  SQL   G+SG Q+
Sbjct: 294 LLMDIDSLITKWRYNHVLMVQRMIGSSQLGTGGSSGYQY 332


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +1

Query: 19  EDVDKEREPKRQEQKVEIETGITFSQLAGAGASGSQHDMFELALNKA 159
           E   +ERE + + ++ + E      Q   +      HD  +++L+K+
Sbjct: 73  EQARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKMSLDKS 119


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +1

Query: 580 DFRQMWAEFEWEN 618
           DF  MWA F  EN
Sbjct: 203 DFHAMWAGFTAEN 215


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +1

Query: 19  EDVDKEREPKRQEQKVEIETGITFSQLAGAGASGSQHDMFELALNKA 159
           E   +ERE + + ++ + E      Q   +      HD  +++L+K+
Sbjct: 224 EQARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKMSLDKS 270


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = +1

Query: 19  EDVDKEREPKRQEQKVEIETGITFSQLAGAGASGSQHDMFELALNKA 159
           E   +ERE + + ++ + E      Q   +      HD  +++L+K+
Sbjct: 283 EQARREREEQERHKQQQQEKQQKIEQQTHSSIHQHHHDPMKMSLDKS 329


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,742
Number of Sequences: 336
Number of extensions: 1923
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)