Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1289
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 181 8e-47
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 33 0.052
SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch... 27 2.6
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 27 3.4
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S... 26 4.5
SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces p... 26 6.0
SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.9
SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces po... 25 7.9
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 25 7.9
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 181 bits (441), Expect = 8e-47
Identities = 88/183 (48%), Positives = 127/183 (69%), Gaps = 3/183 (1%)
Frame = +1
Query: 160 LQGRSGGEAID--RGKLCRVRQLTGCSDPVYAEAIVSVNQYDIVLDVLLVNQTDDTLQNC 333
+Q + G ++ KL + QL G +DPVY EA V + Q+DI+LD+LLVN+TD TLQN
Sbjct: 697 IQATNDGMVVEDLASKLDHIVQLAGFTDPVYCEAYVKIQQFDIILDILLVNRTDTTLQNL 756
Query: 334 CVELATLGELRLVERAAEVVLAPRDFASLRAHVKVASTENGVIFGNVVYEVTGASMDRGV 513
V+LATLG+L++VER + L P F S++A VKV+STE+ VIFGN+VY + D+ +
Sbjct: 757 SVDLATLGDLKVVERPPPMNLGPHAFKSVQATVKVSSTESAVIFGNIVYGGKASDEDK-I 815
Query: 514 VVLNDIHIDIVDFIQPAHCSDADFRQMWAEFEWENKVSVNTNM-TDLHEYLQHLLAFTNM 690
VVLN I ++I+D+I+PA ++ FR MW EFEWENKV +++N L+++L ++ TNM
Sbjct: 816 VVLNGIPVNIIDYIKPAFIPESQFRSMWTEFEWENKVDISSNEDISLYDFLHKIMKKTNM 875
Query: 691 KCL 699
CL
Sbjct: 876 NCL 878
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 32.7 bits (71), Expect = 0.052
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 544 VDFIQPAHCSDADFRQMWAEFEWENKVSVNTNMTDLHEYLQHLLA 678
V+ ++ + S+ D RQ + E W K + N N+ LHE LQ L A
Sbjct: 526 VEIVKKSLSSEFDIRQSFKE-NWVVKSNFNNNLRKLHEKLQSLFA 569
>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
Trk2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 880
Score = 27.1 bits (57), Expect = 2.6
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +1
Query: 493 ASMDRGV--VVLNDIHIDIVDFIQPAHCSDADFRQMWAEFEWENKVSVNTNMTDLHEYLQ 666
AS+D G VV N+ + VDF P+ ++ F+ + +F E +V + N T L+ +L
Sbjct: 235 ASIDNGSLSVVQNNARNNPVDFYIPSSFEESSFQTIPEDF--EPQVHDHENQTQLNHHLD 292
Query: 667 H 669
+
Sbjct: 293 N 293
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +1
Query: 112 ASGSQHDMFELALNKALQGRSGGEAIDRGKLCRVRQLTGCSDPVYAEAIVSV 267
A+ +D F+ A N+A+ + EA++R KL Q + C D V AE ++ V
Sbjct: 711 AAVDDNDSFQ-AKNRAIYNQIYPEAVNRLKLIETLQCSLCMD-VVAELLIIV 760
>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 207
Score = 26.2 bits (55), Expect = 4.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 453 VLRGGDLDVRPQRGEVP 403
V RGGD+++R Q GE P
Sbjct: 57 VERGGDINIRDQDGETP 73
>SPAC644.14c |rhp51|rad51|recombinase Rhp51|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 25.8 bits (54), Expect = 6.0
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = -2
Query: 417 RGEVPRRQHHLGRALHQAQ-LAQRGQLHAAVLQRVVGLVD 301
RGE+ RQ HL R + Q LA + + +VV VD
Sbjct: 257 RGELSARQMHLARFMRTLQRLADEFGIAVVITNQVVAQVD 296
>SPAC5D6.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = +1
Query: 226 GCSDPVYAEAIVSVNQ 273
GCS PVY +AI+SV Q
Sbjct: 238 GCSAPVYNQAILSVWQ 253
>SPAC644.07 |||Rieske ISP assembly protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 449
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +1
Query: 13 LLEDVDKEREPKRQEQKVEIETGITFSQLAGA--GASGSQHDMFELALN 153
LLEDVD + + + +V +TFS L A G + S + + N
Sbjct: 299 LLEDVDSAFQGRERSGEVGFHANVTFSGLLNALDGVTSSDERIIFMTTN 347
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = +1
Query: 487 TGASMDRGVVVLNDIHI--DIVDFIQPAHCSDADFRQMWAEFEWENKVSVNTN 639
TG + R + N H+ ++ +IQP D +++WAE+ + + ++ N
Sbjct: 1372 TGITHFRSGMTTNGEHLIPNLYRYIQPWESEFIDSQRVWAEYAMKRQEALQQN 1424
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,959,716
Number of Sequences: 5004
Number of extensions: 32798
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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