Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1289
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230... 228 3e-60
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365... 214 6e-56
12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179 32 0.38
06_02_0007 - 10533689-10534565,10535054-10535946 31 0.67
08_02_0244 - 14717897-14718037,14719054-14719155,14719238-147193... 31 1.2
01_05_0227 - 19512866-19514983 31 1.2
11_01_0487 - 3763233-3763733,3763827-3764279,3765270-3765392,376... 29 2.7
11_01_0222 + 1740828-1740830,1741109-1741218,1741304-1741487,174... 29 2.7
10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899 29 2.7
03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917 29 3.5
02_02_0286 - 8589736-8590857 29 3.5
01_01_0657 + 5015435-5016292,5016352-5016657 29 3.5
07_03_0893 - 22357967-22358173,22358292-22358366,22358482-22358706 29 4.7
05_01_0201 - 1441063-1443836,1444658-1445758,1446367-1447179,144... 29 4.7
02_05_1042 + 33718988-33720112,33720709-33721305,33721862-337222... 29 4.7
05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306 28 6.2
02_04_0620 - 24491055-24491710,24491794-24491986,24492165-244939... 28 8.2
01_06_0050 + 25967604-25967685,25967780-25967891,25969238-259693... 28 8.2
01_03_0291 + 14735180-14735217,14735317-14735461,14736914-14737180 28 8.2
>01_01_1236 - 10020837-10021041,10021746-10021831,10022552-10023061,
10023914-10025965
Length = 950
Score = 228 bits (558), Expect = 3e-60
Identities = 108/182 (59%), Positives = 137/182 (75%)
Frame = +1
Query: 154 KALQGRSGGEAIDRGKLCRVRQLTGCSDPVYAEAIVSVNQYDIVLDVLLVNQTDDTLQNC 333
KA G +A D +L R+ QLTG SDPVYAEA V+V+ YDIVLDV ++N+T +TLQN
Sbjct: 700 KAATGGFTKDAYDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTIINRTKETLQNL 759
Query: 334 CVELATLGELRLVERAAEVVLAPRDFASLRAHVKVASTENGVIFGNVVYEVTGASMDRGV 513
C+ELAT+G+L+LV+R LAP +RA++KV+STE GVIFGN+VYE T M+R V
Sbjct: 760 CLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYE-TSNVMERSV 818
Query: 514 VVLNDIHIDIVDFIQPAHCSDADFRQMWAEFEWENKVSVNTNMTDLHEYLQHLLAFTNMK 693
VVLNDIHIDI+D+I PA C+D FR MWAEFEWENKV+VNT + + E+L H++ TNMK
Sbjct: 819 VVLNDIHIDIMDYISPATCADVTFRNMWAEFEWENKVAVNTVIQNEKEFLDHIIKSTNMK 878
Query: 694 CL 699
CL
Sbjct: 879 CL 880
>11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,
3650306-3650815,3651700-3653757
Length = 968
Score = 214 bits (522), Expect = 6e-56
Identities = 109/197 (55%), Positives = 137/197 (69%), Gaps = 15/197 (7%)
Frame = +1
Query: 154 KALQGRSGGEAIDRGKLCRVRQLTGCSDPVYAEAIVSVNQYDIVLDVLLVNQTDDTLQNC 333
KA G +A D +L R+ QLTG SDPVYAEA V+V+ YDIVLDV ++N+T +TLQN
Sbjct: 702 KAATGEFTKDADDANRLNRILQLTGFSDPVYAEAYVTVHHYDIVLDVTVINRTKETLQNL 761
Query: 334 CVELATLGELRLVERAAEVVLAPRDFASLRAHVKVASTENGVIFGNVVYEVTGASMDRGV 513
C+ELAT+G+L+LV+R LAP +RA++KV+STE GVIFGN+VYE T M+R V
Sbjct: 762 CLELATMGDLKLVDRPQNYTLAPESSKQIRANIKVSSTETGVIFGNIVYE-TSNVMERSV 820
Query: 514 VVLNDIHIDIVDFIQPAHCSDADFRQMWAEFEWENK---------------VSVNTNMTD 648
VVLNDIHIDI+D+I PA C+D FR MWAEFEWENK V+VNT + D
Sbjct: 821 VVLNDIHIDIMDYISPATCADVAFRNMWAEFEWENKLVNTKIVIHYLCYEEVAVNTVIQD 880
Query: 649 LHEYLQHLLAFTNMKCL 699
E+L H++ TNMKCL
Sbjct: 881 EKEFLDHIIKSTNMKCL 897
>12_01_0954 - 9496370-9496643,9497181-9497239,9497574-9498179
Length = 312
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = -3
Query: 203 NLPRSIASPPLRPCSALLSASSNMSCCEPEAPAPASC 93
+LP S +SP + PCS LL + C +AP P SC
Sbjct: 11 SLPPSRSSPHVPPCSTLLHQAPTSPC---QAPRPTSC 44
>06_02_0007 - 10533689-10534565,10535054-10535946
Length = 589
Score = 31.5 bits (68), Expect = 0.67
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
Frame = +1
Query: 43 PKR--QEQKVEIETGITFSQLAGAGASGSQHDMFELALNKALQGRS-GGEAIDRGKLCRV 213
PKR E+K +E GI L + A G +H + + + L GRS GE CR
Sbjct: 89 PKRLADEEKGVVEDGIANGSLKSSSALGKEHGIASASGSARLVGRSETGERGFSSSRCRP 148
Query: 214 RQLTGCSDPVYAEAIVSVNQ 273
+ SD +I SV +
Sbjct: 149 STSSDVSDESACSSISSVTK 168
>08_02_0244 -
14717897-14718037,14719054-14719155,14719238-14719309,
14719369-14719480,14719640-14719707,14719801-14719908,
14720659-14721078,14722077-14722161,14723068-14723147,
14723336-14723413,14724074-14724213,14724324-14724738
Length = 606
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 206 HNLPRSIASPPL-RPCSALLSASSNMSCCEPEAPAPASC 93
H LPR I+SPPL R SA SS C P+ SC
Sbjct: 14 HRLPRPISSPPLGRAASATSIGSSFFPLCS-SPPSSGSC 51
>01_05_0227 - 19512866-19514983
Length = 705
Score = 30.7 bits (66), Expect = 1.2
Identities = 18/41 (43%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = +1
Query: 127 HDMFELALNKALQGR--SGGEAIDRGKLCRVRQLTGCSDPV 243
HD+ K LQ SG E ID+ K CR LT CS V
Sbjct: 329 HDLIHDLSRKILQDEFVSGIETIDQTKKCRYLSLTSCSGKV 369
>11_01_0487 -
3763233-3763733,3763827-3764279,3765270-3765392,
3765822-3766122,3766283-3766644,3767117-3767713,
3768323-3769447
Length = 1153
Score = 29.5 bits (63), Expect = 2.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 199 KLCRVRQLTGCSDPVYAEAIVSVNQYD--IVLDVLLVNQTDDTLQNCCVELATLGELRLV 372
+L + LTG SDP Y EA + D I L + ++N T+ L + + G L +
Sbjct: 761 ELPKAYTLTGSSDPCYIEAYHLADPTDGRITLHLKILNLTEPELNRVDIRVGLSGALYYM 820
Query: 373 ERAAEVVLAPRDFAS 417
+ + V R+ S
Sbjct: 821 DGFSRTVRHLRNLVS 835
>11_01_0222 +
1740828-1740830,1741109-1741218,1741304-1741487,
1742159-1742344,1742631-1742849,1742958-1743171,
1743549-1743601,1743839-1743874
Length = 334
Score = 29.5 bits (63), Expect = 2.7
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +1
Query: 136 FELALNKALQGRSGGEAIDRGKLCRVRQLTGCSDPVYAEAIVSVNQYDIV 285
FE L + GGE+ D G +VRQ TG + VY A ++V ++V
Sbjct: 276 FERRLGAKSKRDDGGESGDDGIELKVRQSTGNIEEVYKFADLNVETQELV 325
>10_06_0057 + 10143578-10143804,10144072-10144147,10144360-10144899
Length = 280
Score = 29.5 bits (63), Expect = 2.7
Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 1/80 (1%)
Frame = -2
Query: 597 PHLPEVGVAAVRRLDEVDNVNVDVIQHDHAAVHGRSSHFVYHVPEDDAVLRGG-DLDVRP 421
P G + R ++V + D Q A H V VP+ DAV RG + +
Sbjct: 26 PQQRHAGPVELPRREQV--LGADPPQRAPLAARREDEHGVGGVPDPDAVPRGRFKVSIET 83
Query: 420 QRGEVPRRQHHLGRALHQAQ 361
+RG P+ + R LHQ +
Sbjct: 84 RRGNKPQFRRLRLRLLHQGR 103
>03_05_0428 + 24152409-24152783,24152885-24153139,24153204-24153917
Length = 447
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/47 (36%), Positives = 22/47 (46%)
Frame = -3
Query: 233 EHPVN*RTRHNLPRSIASPPLRPCSALLSASSNMSCCEPEAPAPASC 93
E + R R +L AS P C A + A + C +A APASC
Sbjct: 362 ERQASARRRASLEAQAASAPPNKCGAAMMA--RVQRCPSQASAPASC 406
>02_02_0286 - 8589736-8590857
Length = 373
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/41 (43%), Positives = 23/41 (56%)
Frame = -3
Query: 185 ASPPLRPCSALLSASSNMSCCEPEAPAPASCENVMPVSIST 63
A+PP+ P AL SA S + EP A A NV+P +ST
Sbjct: 119 AAPPVVP--ALSSAISKLLQSEPMAAPCADFPNVLPTFVST 157
>01_01_0657 + 5015435-5016292,5016352-5016657
Length = 387
Score = 29.1 bits (62), Expect = 3.5
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Frame = -2
Query: 534 VDVIQHDHAAVHGRSSHFVYHVP---EDDAVLRGGDLDVRPQRG---EVPRRQHHLGRA 376
+D +H+ + G SS+F + P DDA++ GGD DV + G +VP + G A
Sbjct: 256 IDFRRHESGSA-GSSSNFSFAFPMYAADDAIVIGGDDDVAEEEGLRRDVPSAEEGGGAA 313
>07_03_0893 - 22357967-22358173,22358292-22358366,22358482-22358706
Length = 168
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 522 QHDHAAVHGRSSHFVYHVPEDDAVLRGGDLDVRPQRGEVPRRQHHLGRA 376
Q A V R HF + P A LRGG+ + + P+ Q + R+
Sbjct: 96 QVSEATVVAREQHFAFATPSSKAALRGGEEE--EEAPGAPKLQRRVARS 142
>05_01_0201 -
1441063-1443836,1444658-1445758,1446367-1447179,
1447386-1447440
Length = 1580
Score = 28.7 bits (61), Expect = 4.7
Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Frame = -3
Query: 188 IASPPLRPCSALLSASSNMSCCEP-EAPAPA-SCENVMP 78
+A+P PC++ ++A S C P AP+PA C++ +P
Sbjct: 253 VAAPSPTPCASPVAAPSPAPCVSPVAAPSPAPPCKSPVP 291
>02_05_1042 +
33718988-33720112,33720709-33721305,33721862-33722223,
33722383-33722683,33723149-33723271,33723535-33723990,
33724102-33724602
Length = 1154
Score = 28.7 bits (61), Expect = 4.7
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Frame = +1
Query: 199 KLCRVRQLTGCSDPVYAEAIVSVNQYD--IVLDVLLVNQTDDTLQNCCVELATLGELRLV 372
+L + LTG SDP Y EA + D I L + ++N T+ L + + G L +
Sbjct: 761 ELPKTLSLTGSSDPCYIEAYHLADPTDGRITLHLKILNLTELELHRVDIRVGLSGALYYM 820
Query: 373 ERAAEVVLAPRDFAS 417
+ + V R+ S
Sbjct: 821 DGFSRTVRHLRNLVS 835
>05_03_0559 - 15460348-15460357,15460966-15461290,15461340-15462306
Length = 433
Score = 28.3 bits (60), Expect = 6.2
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 423 PQRGEVPRRQHH-LGRALHQAQLAQRGQLHAAVLQRVVGLVDE 298
P RG PRR HH L R +LA+ G + +A+ R G DE
Sbjct: 113 PARGGAPRRPHHPLHRLYLVLELARGGSVLSALDGRGGGHYDE 155
>02_04_0620 -
24491055-24491710,24491794-24491986,24492165-24493991,
24494245-24494304,24494808-24494916,24496393-24496522,
24498740-24498848
Length = 1027
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -3
Query: 167 PCSALLSASSNMSCCEPEAPAPASCENVMPVSIST 63
P S L + S + SC EPE+ A + +N VS S+
Sbjct: 782 PTSVLDAPSEDSSCNEPESSASTTSKNAKAVSRSS 816
>01_06_0050 +
25967604-25967685,25967780-25967891,25969238-25969361,
25969486-25969527,25969622-25969735,25969843-25969905,
25970741-25970868,25972198-25972279,25972372-25972423,
25972515-25972612,25972845-25973006,25973484-25973573,
25973700-25973777
Length = 408
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -3
Query: 197 PRSIASPPLRPCSALLSASSNMSCCEPEA-PAPAS 96
P + A+P LR C L A +N+S PE+ P+ A+
Sbjct: 56 PATTAAPALRSCQLLCKAEANISSNLPESIPSEAN 90
>01_03_0291 + 14735180-14735217,14735317-14735461,14736914-14737180
Length = 149
Score = 27.9 bits (59), Expect = 8.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Frame = +2
Query: 332 AAWSWPRWASCAWWSARPR 388
AAW W + WW+ +PR
Sbjct: 41 AAWLWNETSPLGWWTLKPR 59
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,741,957
Number of Sequences: 37544
Number of extensions: 277720
Number of successful extensions: 1273
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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