Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1289
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)              252   3e-67
SB_27497| Best HMM Match : Death (HMM E-Value=0.028)                   33   0.29 
SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)                    30   2.1  
SB_44237| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_11866| Best HMM Match : Dopey_N (HMM E-Value=0)                     28   8.4  

>SB_5056| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score =  252 bits (616), Expect = 3e-67
 Identities = 117/191 (61%), Positives = 152/191 (79%), Gaps = 1/191 (0%)
 Frame = +1

Query: 130 DMFELALNKALQGR-SGGEAIDRGKLCRVRQLTGCSDPVYAEAIVSVNQYDIVLDVLLVN 306
           D+F +   ++L       + ++  +  +V QLTG SDPVYAEA V+VNQYDIVLDVL+VN
Sbjct: 338 DIFTVQCRQSLSSMLDANKKLEDEQKVKVSQLTGFSDPVYAEAYVNVNQYDIVLDVLIVN 397

Query: 307 QTDDTLQNCCVELATLGELRLVERAAEVVLAPRDFASLRAHVKVASTENGVIFGNVVYEV 486
           QT DTLQN  +ELATLG+L+LVE+   ++L   DF++++A+VKV+STENG+IFGN+VY+V
Sbjct: 398 QTTDTLQNVTLELATLGDLKLVEKPQPILLGANDFSNIKANVKVSSTENGIIFGNIVYDV 457

Query: 487 TGASMDRGVVVLNDIHIDIVDFIQPAHCSDADFRQMWAEFEWENKVSVNTNMTDLHEYLQ 666
           +G   DR  VVLNDIHIDI+D+I PA C+DA+FRQMWAEFEWENKV+VNTN++DL EYL 
Sbjct: 458 SGGGGDRNCVVLNDIHIDIMDYIVPASCTDAEFRQMWAEFEWENKVTVNTNISDLREYLG 517

Query: 667 HLLAFTNMKCL 699
           HL+A TNM CL
Sbjct: 518 HLIASTNMLCL 528


>SB_27497| Best HMM Match : Death (HMM E-Value=0.028)
          Length = 892

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 553 IQPAHCSDADFRQMWAEFEWE 615
           +QP  C DADF + WAE E E
Sbjct: 451 VQPVDCQDADFEEDWAELERE 471


>SB_56998| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 478

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 9/98 (9%)
 Frame = +1

Query: 283 VLDVLLVNQTDDTLQNCCVELATLGELRLVERAAEVVLAPRDFASLRAHVKVAST---EN 453
           +L  +  N  D    +CC  L       L ++  +VVLA  D+  ++ H  +  T   E+
Sbjct: 143 ILQEIDTNYKDKNGCDCCQALVLAPTRELAQQIQKVVLALGDYMHVKCHACIGGTNVRED 202

Query: 454 GVIFGNVVYEVTGA------SMDRGVVVLNDIHIDIVD 549
            +     V+ V G        ++RGV+   DI + ++D
Sbjct: 203 RMKLEEGVHVVVGTPGRVFDMINRGVLNTRDIKLFVLD 240


>SB_25763| Best HMM Match : MgtE_N (HMM E-Value=1.9)
          Length = 483

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 28/98 (28%), Positives = 40/98 (40%), Gaps = 1/98 (1%)
 Frame = -2

Query: 423 PQRGEVPRRQHHLGRALHQAQLAQRGQL-HAAVLQRVVGLVDEQHVQHNXXXXXXXXXXX 247
           PQ+ E P++  HL +  H  QL    QL H   L+    L   Q ++H            
Sbjct: 181 PQQLEHPQQLEHLQQLEHPRQLEHLQQLKHLQQLEYPQQLEYPQQLEHPQQLEYLQQLEY 240

Query: 246 VHGIGASRQLTHAAQLAAVDCLATAATLQRLVERQLEH 133
              +   +QL H  QL  +  L     L+ L  +QLEH
Sbjct: 241 PQQLEYLQQLEHPQQLEHLQQLEHQQQLEYL--QQLEH 276


>SB_44237| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 334

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -2

Query: 216 THAAQLAAVDCLATAATLQRLVERQLEHV 130
           THA ++A  D + TA ++ RLV RQ+ HV
Sbjct: 222 THAVRMA--DIINTAPSMPRLVGRQVHHV 248


>SB_11866| Best HMM Match : Dopey_N (HMM E-Value=0)
          Length = 287

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +1

Query: 148 LNKALQGRSGGEAIDRGKLCRVRQLTGCSDPVYAEAI--VSVNQYDIV 285
           LNKALQG    +AI R KL   ++L+ C+ P     +   ++  YD++
Sbjct: 44  LNKALQGHPKFKAIPR-KLTIGKRLSQCTHPALPSGVHLKALETYDLI 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,068,153
Number of Sequences: 59808
Number of extensions: 291153
Number of successful extensions: 952
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)