Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1289
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical ...   232   2e-61
AF047662-4|AAC04444.1|  145|Caenorhabditis elegans Hypothetical ...    28   5.6  

>AF125459-7|AAD12836.1|  971|Caenorhabditis elegans Hypothetical
            protein Y25C1A.5 protein.
          Length = 971

 Score =  232 bits (568), Expect = 2e-61
 Identities = 116/219 (52%), Positives = 158/219 (72%), Gaps = 2/219 (0%)
 Frame = +1

Query: 49   RQEQKVEIETGITFSQLAGAGASGSQHDMFELALNKALQGRSGGEAID--RGKLCRVRQL 222
            R +  VEI+  I F+QL+ A ++    ++F+L+L++AL      +  D    KL +V QL
Sbjct: 670  RSKDFVEIDKTINFTQLS-ARSNQQGENLFDLSLSQALGTAPKAQKFDFSSSKLGKVIQL 728

Query: 223  TGCSDPVYAEAIVSVNQYDIVLDVLLVNQTDDTLQNCCVELATLGELRLVERAAEVVLAP 402
             G SDP+YAEA V+VNQYDIVLDVL+VNQT DTLQN  +ELAT+G+L+LV++   V LAP
Sbjct: 729  AGFSDPIYAEAYVNVNQYDIVLDVLIVNQTSDTLQNVSLELATVGDLKLVDKPTPVTLAP 788

Query: 403  RDFASLRAHVKVASTENGVIFGNVVYEVTGASMDRGVVVLNDIHIDIVDFIQPAHCSDAD 582
             DF++++A VKVASTENGVIF  + Y+VTG++ DR  V L DI IDI+D+I P + +D +
Sbjct: 789  NDFSNIKATVKVASTENGVIFSTISYDVTGSTSDRNCVYLQDIKIDIMDYIVPGNVTDTE 848

Query: 583  FRQMWAEFEWENKVSVNTNMTDLHEYLQHLLAFTNMKCL 699
            FR MW++FEWENKV+V T + DL ++L HL   TNMK L
Sbjct: 849  FRTMWSDFEWENKVNVMTPIRDLRDFLNHLSTSTNMKVL 887


>AF047662-4|AAC04444.1|  145|Caenorhabditis elegans Hypothetical
           protein T22B2.6 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 179 PPLRPCSALLSASSNMSCCEPE-APAPASCENVMPVSISTF 60
           P + PC +L  + S  SC  P  APAP +     P  I+ +
Sbjct: 6   PAIMPCCSLSISYSCSSCSAPVVAPAPVAVSGYQPYGIAYY 46


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,339,483
Number of Sequences: 27780
Number of extensions: 199399
Number of successful extensions: 784
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 760
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)