Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1288
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    34   0.013
SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|c...    32   0.072
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    28   1.2  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    28   1.2  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    26   4.7  
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr...    25   6.2  
SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyce...    25   6.2  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    25   8.3  
SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    25   8.3  

>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 34.3 bits (75), Expect = 0.013
 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
 Frame = +3

Query: 102 IENSDKWRNSAPNFYSIQSVDIRQYSFVHNIVPKS-VRDGPHKNADDVLFDMFKNEETGL 278
           IEN D++++ A ++Y  +  D +  + V ++VP + V++ P    DDVL D+FKN +  +
Sbjct: 192 IENLDEYKSQAKSYYFDRLFD-QNINKVFDVVPVTQVKNAP----DDVLEDLFKNYDFIV 246

Query: 279 LPVGKFLAAL 308
              GK  A L
Sbjct: 247 TEYGKGRALL 256


>SPAC1D4.09c |||DUF602 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 31.9 bits (69), Expect = 0.072
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 2/85 (2%)
 Frame = +3

Query: 264 EETGLLPVGKFLAALRTTGIRKNDARVKEVMHSLYKVHKESNFEGGS--PETLKLDRKTF 437
           EE  ++P+      L+T   R  D  + E  HSL K  K+SN  G        K + K  
Sbjct: 149 EEKDVIPINPNAEQLKTLSKRLLDLALSEKTHSLNKASKKSNKNGDKKRKHVSKSNSKHA 208

Query: 438 KEVIAPNIVLITRAFRSQFVIPDFQ 512
           K  +  N +L     +S+  + D +
Sbjct: 209 KHELRTNRMLDGENVKSETSVTDME 233


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -2

Query: 434 GLSIKFQCFWRSSFEIRFLVNFVQAMHYLFN 342
           G+   FQCF R S  ++   + V A+ Y+FN
Sbjct: 476 GILRVFQCFRRYSDSLKSFPHLVNALKYIFN 506


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 186 ARTNTALYRRIESNRSWVLSCAIYQSFQ-LYRRVSLDCSVENRR 58
           A TNT L+RR ES      +C +Y     ++R V++  ++  RR
Sbjct: 176 ATTNTPLWRRDESGNPICNACGLYYKIHGVHRPVTMKKAIIKRR 219


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 461 SVDNSSFPKSVRNSRLPRFYQGHRGNV 541
           S D ++   + R++ LPRF   HRGNV
Sbjct: 4   SQDVNAEAANERSALLPRFLGSHRGNV 30


>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 808

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -2

Query: 497 YELTSESSSYQHYIWCNDFFEGLSIKFQCFWRSSFEIRFLVN 372
           + ++  S   +  +   DFF G ++K +  WR+S  I +L++
Sbjct: 195 HPVSPASVDLESMVMDKDFFAGFNVKKEGAWRTSELILYLLD 236


>SPBC839.07 |ibp1||itty bitty phosphatase Ibp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 138

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 120 WRNSAPNFYSIQSVDIRQYSFVHNIVPKSVR 212
           W   +PN  SI  +D+R Y +    +P SVR
Sbjct: 15  WLMESPNEISI--IDVRDYDYEGERIPGSVR 43


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/54 (33%), Positives = 26/54 (48%)
 Frame = -3

Query: 337 ASFFLIPVVLRAAKNFPTGSNPVSSFLNISNRTSSAFLCGPSRTDLGTMLCTNE 176
           +S  L P+ L   K F      V SF +   + +S+   G S + LGT L +NE
Sbjct: 428 SSSLLTPLALPNKKAFQPVKFRVPSFSSPLVKPASSSSFGRSHSHLGTSLRSNE 481


>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1639

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +3

Query: 114  DKWRNSAPNFYSIQSVDIR 170
            ++W+   PNFYS+  +D++
Sbjct: 1543 EEWKREKPNFYSLILMDLQ 1561


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,535,155
Number of Sequences: 5004
Number of extensions: 54554
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)