Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1288
(591 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130... 32 0.30
05_05_0308 - 23985165-23985556,23985624-23985699 30 1.2
02_02_0340 + 9135846-9138377 29 2.8
07_03_0413 + 17854787-17854847,17855362-17855606,17856127-178561... 29 3.7
05_03_0657 + 16694833-16694963,16695567-16695684,16696280-166963... 28 4.8
05_02_0030 + 5826065-5826092,5826307-5828309,5828412-5828732,582... 28 4.8
03_02_0693 - 10441253-10441294,10441404-10441511,10441594-104416... 28 6.4
06_03_1217 - 28484007-28487237 27 8.5
03_06_0071 + 31465707-31466237,31467455-31468075,31468438-314685... 27 8.5
01_06_1790 - 39888313-39888350,39888437-39888530,39888612-398888... 27 8.5
>05_01_0184 -
1298640-1298751,1298936-1299027,1299695-1299910,
1300045-1300614
Length = 329
Score = 32.3 bits (70), Expect = 0.30
Identities = 18/65 (27%), Positives = 35/65 (53%)
Frame = +3
Query: 342 VKEVMHSLYKVHKESNFEGGSPETLKLDRKTFKEVIAPNIVLITRAFRSQFVIPDFQDFI 521
+K++ H L + +++ S ET++L+R T+K+ + NIV + S+ +I F I
Sbjct: 255 MKKLYHELMRKYQQIIHCSHSKETVRLERVTYKQYSSCNIVQTSPNSTSKHIITAFSPQI 314
Query: 522 KDIEE 536
+ E
Sbjct: 315 LQVAE 319
>05_05_0308 - 23985165-23985556,23985624-23985699
Length = 155
Score = 30.3 bits (65), Expect = 1.2
Identities = 11/38 (28%), Positives = 23/38 (60%)
Frame = +3
Query: 243 LFDMFKNEETGLLPVGKFLAALRTTGIRKNDARVKEVM 356
+FD+F ++E G + G+ + ALR+ G ++A + +
Sbjct: 16 IFDLFDSDEDGRIAAGELVTALRSLGQNVDEAEARRFL 53
>02_02_0340 + 9135846-9138377
Length = 843
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +3
Query: 87 RPVYIIENSDKWRNSAPNFYSIQSVDIRQYSFVHNIVPKSVR 212
RP Y++ D + A N S + +DI Y+F + +P+S+R
Sbjct: 545 RPYYVMH--DLLHDLARNISSQECIDISSYNFRSDSIPQSIR 584
>07_03_0413 +
17854787-17854847,17855362-17855606,17856127-17856189,
17856276-17856294,17856547-17856645,17856725-17856802,
17856891-17857135,17857796-17857952,17858161-17858303
Length = 369
Score = 28.7 bits (61), Expect = 3.7
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +3
Query: 102 IENSDKWRNSAPNFYSIQSVDIRQ--YSFVHNIVPKSVRDGPHKNADDVLFDMFKNEE-- 269
+ S +WR A NF+S S ++Q S NI + + G + +F + +
Sbjct: 3 LAESPQWRQKATNFFSSSSFKLKQAGQSAGDNIADVAGKVGSVVKSRWAVFQEARQRQPP 62
Query: 270 TGLLPVGKFLAALRTTGI--RKNDARVKE 350
G +F++A TTG+ RK + KE
Sbjct: 63 PGETVQERFISAAATTGVLLRKGISETKE 91
>05_03_0657 +
16694833-16694963,16695567-16695684,16696280-16696376,
16700126-16700232,16700473-16700595,16700791-16700944,
16701237-16701297,16701417-16701781,16701875-16703483,
16703697-16703940
Length = 1002
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = +3
Query: 207 VRDGPHKNADDVLFDMFKNEET-GLLPVGKFLAALRTTGIRKND 335
+R P K DVLF+ KNE+ +P +LR TG+ +N+
Sbjct: 97 MRISPFKYYCDVLFEAMKNEQPYDSIPNFSAADSLRITGVGRNE 140
>05_02_0030 +
5826065-5826092,5826307-5828309,5828412-5828732,
5828821-5828907,5828981-5829583,5829680-5829844,
5829941-5830235,5830320-5830534,5830621-5830926,
5831200-5831263,5831384-5831623,5831756-5831853
Length = 1474
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = -2
Query: 566 SVLLLCSPVHFLYVLDKILEVWNYELTSESSSYQHYIWCNDFFEGL 429
+V+L+ V FL +DKIL + N E+T E +Y + FE L
Sbjct: 795 TVILVTHQVEFLSKVDKILVMENGEITQE-GTYSELLQSGTAFEQL 839
>03_02_0693 -
10441253-10441294,10441404-10441511,10441594-10441677,
10441765-10443062,10443111-10444804,10444890-10444957,
10445057-10445186,10445292-10445415,10445551-10445711,
10446714-10446868
Length = 1287
Score = 27.9 bits (59), Expect = 6.4
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +3
Query: 120 WRNSAPNFYSIQSVDIRQYSFVHNIVPKSVRDGPHKNAD--DVLFDMF----KNEETGLL 281
+R N Y S D + S H+ V S D P N + D++ D F K +E +
Sbjct: 246 FRPQMQNLYGETSPDEKPCSMNHSEVQISFTDSPDTNTEERDIMVDTFSSMDKGKENNYV 305
Query: 282 PVGKFLAALRTTGIRKNDAR 341
GK R +DAR
Sbjct: 306 MAGKNRLLSEEALSRSSDAR 325
>06_03_1217 - 28484007-28487237
Length = 1076
Score = 27.5 bits (58), Expect = 8.5
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = +3
Query: 138 NFYSIQSVDIRQYSFVHNIVPKSVRDGPHKNADDVLFDMFKNEETGLLPVGKF-LAALRT 314
N+ S++ +D+R SFV N+ P+ +FD+ N TG +P + A++
Sbjct: 324 NWTSLRFIDLRSNSFVGNLTDVDFSGLPNL----TVFDVASNNFTGTMPPSIYSCTAMKA 379
Query: 315 TGIRKN 332
+ +N
Sbjct: 380 LRVSRN 385
>03_06_0071 +
31465707-31466237,31467455-31468075,31468438-31468520,
31468895-31468979
Length = 439
Score = 27.5 bits (58), Expect = 8.5
Identities = 16/36 (44%), Positives = 19/36 (52%)
Frame = -2
Query: 572 LPSVLLLCSPVHFLYVLDKILEVWNYELTSESSSYQ 465
L SV + CS L LDKIL+ W T +S S Q
Sbjct: 284 LISVCVFCSISSRLPRLDKILKTWFSNKTQDSKSMQ 319
>01_06_1790 -
39888313-39888350,39888437-39888530,39888612-39888836,
39888944-39889018,39889144-39889212,39889319-39889384,
39889492-39889713,39889794-39890681,39890973-39891053,
39892546-39892598,39893010-39893088,39893218-39893319
Length = 663
Score = 27.5 bits (58), Expect = 8.5
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = +2
Query: 425 SKDLQRSHCTKYSVDNSSFPKSVRNSRLPRFYQGHRGNVLGC 550
+KD+ +S C+ + +S FP + LP Q +GN LGC
Sbjct: 543 AKDMHQS-CSP--LQSSHFPLETSGAPLPYINQPQQGNPLGC 581
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,838,262
Number of Sequences: 37544
Number of extensions: 324235
Number of successful extensions: 787
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 772
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1400060088
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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