Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1288
         (591 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.1  
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_3752| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1048

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 300 AALRTTGIRKNDARVKEVMHSLYKVHKESNFEG--GSPETLKLDRKTFKEVIAPNIVL-I 470
           A L   G+  ++ ++KE M +L K  K S  E     P T+ L  +  KEV+ P+I   +
Sbjct: 552 AILHDYGVELSEEKMKEYMKAL-KTKKFSKLEFCLRHPYTIALVEQNLKEVLVPSISRNL 610

Query: 471 TRAFRSQFVI 500
           T   RS+ ++
Sbjct: 611 TNKLRSKLLM 620


>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1263

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +2

Query: 479  FPKSVRNSRLPRFYQGHRGNVLG 547
            FP+S+R+ +L RFY   R + LG
Sbjct: 967  FPQSIRDMKLTRFYLRRRNSPLG 989


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,382,262
Number of Sequences: 59808
Number of extensions: 373508
Number of successful extensions: 1026
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 966
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)