Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1288
(591 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl methyl... 30 1.0
At3g46610.1 68416.m05060 pentatricopeptide (PPR) repeat-containi... 29 3.1
At2g42720.1 68415.m05291 F-box family protein contains F-box dom... 29 3.1
At1g55475.1 68414.m06345 expressed protein 28 4.1
At1g34520.1 68414.m04290 long-chain-alcohol O-fatty-acyltransfer... 28 4.1
At3g20610.1 68416.m02608 non-race specific disease resistance pr... 28 5.4
At1g76540.1 68414.m08907 cell division control protein, putative... 28 5.4
At1g55350.4 68414.m06326 calpain-type cysteine protease family i... 28 5.4
At1g55350.3 68414.m06325 calpain-type cysteine protease family i... 28 5.4
At1g55350.2 68414.m06324 calpain-type cysteine protease family i... 28 5.4
At1g55350.1 68414.m06323 calpain-type cysteine protease family i... 28 5.4
At5g33303.1 68418.m03951 hypothetical protein 27 7.1
At5g07570.1 68418.m00867 glycine/proline-rich protein contains s... 27 7.1
At3g62480.1 68416.m07020 hypothetical protein 27 9.4
>At4g26420.1 68417.m03802 S-adenosyl-L-methionine:carboxyl
methyltransferase family protein similar to caffeine
synthase [Camellia sinensis][GI:9967143],
defense-related protein cjs1 [Brassica
carinata][GI:14009292],
S-adenosyl-L-methionine:salicylic acid carboxyl
methyltransferase [Clarkia breweri][GI:6002712]
Length = 619
Score = 30.3 bits (65), Expect = 1.0
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 389 FRRRISRNTET*SKDLQRSHCTKYSVDNSSFPKSVRNSRLPRFYQGHRGNVLGCKGAIL 565
FRR + + + + +RSHC S S+ RLPR G +V+ CK ++
Sbjct: 482 FRRHLGTSADMTIQGGRRSHCGDQRTSKRSSQMSLETKRLPRTVAGE--SVVWCKTGVV 538
>At3g46610.1 68416.m05060 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 665
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -3
Query: 280 SNPVSSFLNISNRTSSAFLCGPSRTDLGT 194
S+ +SSF+ +S+ FLC P R+ LG+
Sbjct: 50 SSSISSFIFVSSNRKVLFLCEPKRSLLGS 78
>At2g42720.1 68415.m05291 F-box family protein contains F-box domain
Pfam:PF00646
Length = 443
Score = 28.7 bits (61), Expect = 3.1
Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 518 KILEVWNYELTS-ESSSYQHYIWCNDFFEGLSIKFQCFWRSSFEIRFLVNFVQA 360
K+LE+W+Y+ TS E H++ F E + I+ + +I++L+ +A
Sbjct: 380 KVLEIWSYQGTSKELKQMGHFLMKLQFLELVKIRAVSNLQVPIDIQYLLKLPRA 433
>At1g55475.1 68414.m06345 expressed protein
Length = 120
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 245 QDIISILMWAISD*FRDDVMHERILPYIDGLNRIE 141
+D I +LM + DD HE IL ++DGL E
Sbjct: 6 KDSIHVLMSVLLSTSDDDDDHEEILEHVDGLTNAE 40
>At1g34520.1 68414.m04290 long-chain-alcohol O-fatty-acyltransferase
family protein / wax synthase family protein wax
synthase - Simmondsia chinensis, PID:g5020219 similar
to wax synthase [gi:5020219] from Simmondsia chinensis
Length = 287
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -2
Query: 572 LPSVLLLCS-PVHFLYVLDKILEVWNYELT 486
LP +LL+C P+H VLD +L + N LT
Sbjct: 139 LPPILLICLYPLHLYLVLDVLLTIVNALLT 168
>At3g20610.1 68416.m02608 non-race specific disease resistance
protein, putative similar to non-race specific disease
resistance protein NDR1 [Arabidopsis thaliana]
gi|2754816|gb|AAB95208
Length = 222
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 428 KDLQRSHCTKYSVDNSSFPKSVRNSRLPRFYQGH 529
+DL S T+ ++NSS V N +PRFYQGH
Sbjct: 83 EDLHLSFSTR--INNSSL--LVANYTVPRFYQGH 112
>At1g76540.1 68414.m08907 cell division control protein, putative
similar to SWISS-PROT:Q38775, cell division control
protein 2 homolog D [Antirrhinum majus]; contains
protein kinase domain, Pfam:PF00069
Length = 313
Score = 27.9 bits (59), Expect = 5.4
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 186 HNIVPKSVRDGPHKNADDVLFDMFKNEETGLLPVGKFLAALRTTGIRKNDARVKEVMHSL 365
H + V+ G K VL+ +F+ +T V KF+ + R+TG +K +M+ L
Sbjct: 73 HVVRLMDVKQGLSKEGKTVLYLVFEYMDTD---VKKFIRSFRSTGKNIPTQTIKSLMYQL 129
Query: 366 YKVHKESNFEG-----GSPETLKLDRKTFKEVIA 452
K + G P L +D KT + IA
Sbjct: 130 CKGMAFCHGHGILHRDLKPHNLLMDPKTMRLKIA 163
>At1g55350.4 68414.m06326 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 566 SVLLLCSPVHFLYVLDKILEVWNYELTSESSSYQHYIWCNDFFEGLSIKF 417
SVLLL V + + L+V LTS+S Y W GLS+ F
Sbjct: 656 SVLLLSPVVCSIMAFLRSLQVEEMALTSKSRKYGFVAWLLSTSVGLSLSF 705
>At1g55350.3 68414.m06325 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 566 SVLLLCSPVHFLYVLDKILEVWNYELTSESSSYQHYIWCNDFFEGLSIKF 417
SVLLL V + + L+V LTS+S Y W GLS+ F
Sbjct: 656 SVLLLSPVVCSIMAFLRSLQVEEMALTSKSRKYGFVAWLLSTSVGLSLSF 705
>At1g55350.2 68414.m06324 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 566 SVLLLCSPVHFLYVLDKILEVWNYELTSESSSYQHYIWCNDFFEGLSIKF 417
SVLLL V + + L+V LTS+S Y W GLS+ F
Sbjct: 656 SVLLLSPVVCSIMAFLRSLQVEEMALTSKSRKYGFVAWLLSTSVGLSLSF 705
>At1g55350.1 68414.m06323 calpain-type cysteine protease family
identical to calpain-like protein GI:20268660 from
[Arabidopsis thaliana]; contains Pfam profiles: PF00648
Calpain family cysteine protease, PF01067 Calpain large
subunit,domain III; identical to cDNA calpain-like
protein GI:20268659
Length = 2151
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = -2
Query: 566 SVLLLCSPVHFLYVLDKILEVWNYELTSESSSYQHYIWCNDFFEGLSIKF 417
SVLLL V + + L+V LTS+S Y W GLS+ F
Sbjct: 656 SVLLLSPVVCSIMAFLRSLQVEEMALTSKSRKYGFVAWLLSTSVGLSLSF 705
>At5g33303.1 68418.m03951 hypothetical protein
Length = 336
Score = 27.5 bits (58), Expect = 7.1
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Frame = +3
Query: 243 LFDMFKNEETGLLPVGKFLAALRTTGIRKNDAR-VKEVMHSLYKVHKESNFEGGSPETLK 419
L D + +++T +LP ++ T +R D + V E +L+K+ + G
Sbjct: 78 LKDRYDHQKTVILPKARY----DWTHLRLQDYKSVSEYNSALFKITSKLELCGEKITDAD 133
Query: 420 LDRKTFKEVIAPNIVLITRAFRSQFV 497
KTF A NIVL T+ +FV
Sbjct: 134 KLEKTFSTFHAKNIVLQTQYREKRFV 159
>At5g07570.1 68418.m00867 glycine/proline-rich protein contains
similarity to flagelliform silk protein [Nephila
clavipes] gi|7106224|gb|AAF36090
Length = 1504
Score = 27.5 bits (58), Expect = 7.1
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = -2
Query: 455 WCNDFFEGLSIKFQCFWRSSFEIRFLVNF 369
+ +DFF GL + F + + F+I F+V+F
Sbjct: 314 FASDFFVGLDVGFLTGFATDFDIGFVVDF 342
>At3g62480.1 68416.m07020 hypothetical protein
Length = 166
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 277 NP-VSSFLNISNRTSSAFLCGPSRTDLGTMLCTN 179
NP +S+ N RT S F GP+ TD T C N
Sbjct: 45 NPTISADGNFIPRTPSLFYLGPALTDADTTECKN 78
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,983,519
Number of Sequences: 28952
Number of extensions: 272592
Number of successful extensions: 785
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 785
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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