Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1287
         (610 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical ...    29   3.4  
Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical p...    28   6.0  
U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction...    27   7.9  

>AF068711-1|AAC17775.2| 1121|Caenorhabditis elegans Hypothetical
           protein R09A1.1 protein.
          Length = 1121

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 274 LKQNYPT*DTRSKYLFELIALKYDERRLPTYHGACNNKKLRY 149
           LK+N PT    ++Y+F  + + +   +L    G  NN+++ +
Sbjct: 235 LKENKPTFGMPNQYIFNDVNMMWSTNKLRQSEGRTNNRRMNF 276


>Z68882-10|CAA93111.1|  397|Caenorhabditis elegans Hypothetical
           protein C47E12.7 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 10/26 (38%), Positives = 18/26 (69%)
 Frame = +1

Query: 79  VGSRIRSFTSKKSRVKLCSCFIGSIS 156
           +G  I  FTS++ +V+  +CF+ S+S
Sbjct: 76  IGGLINIFTSEEEKVRFVACFLKSLS 101


>U39650-4|AAK39186.1|  944|Caenorhabditis elegans Apical junction
           molecule protein1, isoform b protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 73  NLVGSRIRSFTSKKSRVKLCSCFIGSISIFCYCMLHDKL 189
           NLV  R +S+ S+K    +C+C   S+  FC+ ++H  L
Sbjct: 876 NLVSFRQKSYPSRK----VCACLCESVCAFCF-LIHSFL 909


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,369,107
Number of Sequences: 27780
Number of extensions: 231511
Number of successful extensions: 451
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)