Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1287
         (610 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carot...    28   5.6  
At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carot...    28   5.6  
At2g14635.1 68415.m01646 expressed protein                             28   5.6  

>At3g04870.2 68416.m00529 zeta-carotene desaturase (ZDS1) / carotene
           7,8-desaturase identical to SP|Q38893 Zeta-carotene
           desaturase, chloroplast precursor (EC 1.14.99.30)
           (Carotene 7,8-desaturase) {Arabidopsis thaliana}
          Length = 558

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 163 CYCMLHDKLADGARHISALSIQISTLTSCLK*DSFV 270
           C  +L+DK ADG  +++ L+I  +T    +K D +V
Sbjct: 299 CREILYDKSADGETYVTGLAISKATNKKIVKADVYV 334


>At3g04870.1 68416.m00528 zeta-carotene desaturase (ZDS1) / carotene
           7,8-desaturase identical to SP|Q38893 Zeta-carotene
           desaturase, chloroplast precursor (EC 1.14.99.30)
           (Carotene 7,8-desaturase) {Arabidopsis thaliana}
          Length = 558

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 163 CYCMLHDKLADGARHISALSIQISTLTSCLK*DSFV 270
           C  +L+DK ADG  +++ L+I  +T    +K D +V
Sbjct: 299 CREILYDKSADGETYVTGLAISKATNKKIVKADVYV 334


>At2g14635.1 68415.m01646 expressed protein
          Length = 61

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 121 VKLCSCFIGSISIFCYCMLHDKLADGARHISA 216
           V+LCS FI  +S F   +  + + DG+ H+S+
Sbjct: 23  VQLCSSFISKMSPFMAALALEYMFDGSDHMSS 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,413,890
Number of Sequences: 28952
Number of extensions: 208174
Number of successful extensions: 440
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)