BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-1286 (650 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch... 40 3e-04 SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces po... 36 0.004 SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy... 35 0.009 SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 33 0.027 SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch... 32 0.062 SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo... 30 0.25 SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha... 27 2.3 SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subuni... 26 4.1 SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 5.4 SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Ma... 25 7.2 SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 25 7.2 SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.5 SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual 25 9.5 >SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Schizosaccharomyces pombe|chr 2|||Manual Length = 297 Score = 39.9 bits (89), Expect = 3e-04 Identities = 31/107 (28%), Positives = 51/107 (47%), Gaps = 8/107 (7%) Frame = +1 Query: 55 GTFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQVLS----ANLIRYYDTIL 222 G YK RHK++ I A K S+ + E+ ++ +V +N +R D IL Sbjct: 16 GVVYKARHKLSGRIVAMKKIRLEDESEGVPSTAIREISLLKEVNDENNRSNCVRLLD-IL 74 Query: 223 HSPSKTLYFVLEY--NSWRNVQELIEECKAT--DKHIEESFIWRLLH 351 H+ SK LY V E+ + + I E AT D + + F ++L++ Sbjct: 75 HAESK-LYLVFEFLDMDLKKYMDRISETGATSLDPRLVQKFTYQLVN 120 >SPAC222.07c |hri2||eIF2 alpha kinase Hri2|Schizosaccharomyces pombe|chr 1|||Manual Length = 639 Score = 36.3 bits (80), Expect = 0.004 Identities = 23/93 (24%), Positives = 47/93 (50%), Gaps = 2/93 (2%) Frame = +1 Query: 1 ARMSEKLKDFQVLDVFCGGTFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQ 180 +R E +++ +L G+ Y VR+K+ +A K + S F + E+K +++ Sbjct: 165 SRYIEDFEEYSLLGRGGFGSVYHVRNKIDGAEYAMKKIN-STFQQMSYSKIFREIKCLAK 223 Query: 181 VLSANLIRYYDTILHSPSKT--LYFVLEYNSWR 273 + N+IRY+ + + S ++ + V+ NS R Sbjct: 224 MDHPNVIRYFSSWVESTTEATQMPIVMSKNSSR 256 >SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 589 Score = 35.1 bits (77), Expect = 0.009 Identities = 15/57 (26%), Positives = 35/57 (61%) Frame = +1 Query: 151 VVNEVKIISQVLSANLIRYYDTILHSPSKTLYFVLEYNSWRNVQELIEECKATDKHI 321 ++NE+ ++ + + N++ Y D+ L + L+ V+EY + ++ ++IE+ K T+ I Sbjct: 356 ILNEITVMRESIHPNIVTYLDSFL-VRERHLWVVMEYMNAGSLTDIIEKSKLTEAQI 411 >SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizosaccharomyces pombe|chr 1|||Manual Length = 1401 Score = 33.5 bits (73), Expect = 0.027 Identities = 14/76 (18%), Positives = 42/76 (55%) Frame = +1 Query: 142 IQNVVNEVKIISQVLSANLIRYYDTILHSPSKTLYFVLEYNSWRNVQELIEECKATDKHI 321 + + NE+ ++ ++ N++ YY +H + +Y +E+ ++ +L+ + D+++ Sbjct: 1080 VDQIHNEMTVLERLNHPNVVTYYGVEVH--REKVYIFMEFCQGGSLADLLAHGRIEDENV 1137 Query: 322 EESFIWRLLHELARVY 369 + ++ +LL LA ++ Sbjct: 1138 LKVYVVQLLEGLAYIH 1153 >SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 593 Score = 32.3 bits (70), Expect = 0.062 Identities = 20/69 (28%), Positives = 32/69 (46%) Frame = +1 Query: 55 GTFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQVLSANLIRYYDTILHSPS 234 G YK + VT ++ A K D V EVKI+ ++ N++R + ++ S Sbjct: 289 GKVYKAINTVTGDLVALKRIRLEQEKDGFPITTVREVKILQRLRHKNIVRLLEIMVEKSS 348 Query: 235 KTLYFVLEY 261 +Y V EY Sbjct: 349 --VYMVFEY 355 >SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizosaccharomyces pombe|chr 3|||Manual Length = 338 Score = 30.3 bits (65), Expect = 0.25 Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 3/69 (4%) Frame = +1 Query: 13 EKLKDFQVLDVFCGG---TFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQV 183 E + F++ +V G T + V+H+ T FA K + + +I+ + NEV ++ + Sbjct: 25 ESVSQFKIRNVIGKGSWSTVFVVKHRQTKQRFALKCINKKKHDEHKIKKLRNEVLLLQSL 84 Query: 184 LSANLIRYY 210 L ++Y Sbjct: 85 NHPLLCKFY 93 >SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 363 Score = 27.1 bits (57), Expect = 2.3 Identities = 19/69 (27%), Positives = 32/69 (46%) Frame = +1 Query: 55 GTFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQVLSANLIRYYDTILHSPS 234 G+ K R + T IFA K + + Q Q ++ E+KI S +++YY ++ Sbjct: 91 GSVRKCRIRGTQMIFAMKTVLAAPNTALQKQ-LLRELKINRSCTSPYIVKYYGACYNNAE 149 Query: 235 KTLYFVLEY 261 L +EY Sbjct: 150 CQLNIAMEY 158 >SPAC959.09c |apc5|SPAP32A8.01c|anaphase-promoting complex subunit Apc5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 737 Score = 26.2 bits (55), Expect = 4.1 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = +1 Query: 193 NLIRYYDTILHSPSKTLY 246 NL RY+D I+HS K Y Sbjct: 275 NLCRYFDHIMHSDEKVSY 292 >SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 365 Score = 25.8 bits (54), Expect = 5.4 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +2 Query: 497 DVMRQVGDLIHTICYTPNACDKIKEFHYSDDLRDVISLL 613 DVMR+ G+ T + N + EF +D+R+ ++ L Sbjct: 116 DVMRKAGEPTFTDAHRENPGAGVVEFSTEEDMRNALTSL 154 >SPAC22A12.13 |mug84||pig-P |Schizosaccharomyces pombe|chr 1|||Manual Length = 120 Score = 25.4 bits (53), Expect = 7.2 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = +3 Query: 21 KGFSSFRCLLRRYVL*SETQGHQQHFRVEGVRL 119 K FSS C++ +Y L E G H RV +RL Sbjct: 78 KPFSSLECIVDQYALVGEEDG-AAHGRVVDLRL 109 >SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosaccharomyces pombe|chr 2|||Manual Length = 1935 Score = 25.4 bits (53), Expect = 7.2 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 1/121 (0%) Frame = +1 Query: 118 CSAFSDEQIQNVVNEVKIISQVL-SANLIRYYDTILHSPSKTLYFVLEYNSWRNVQELIE 294 CS FS QI++ NE + + ++ +++ + D+I ++ K + Y S +V++ Sbjct: 827 CSEFS--QIKSRENEHRELESLMENSSPCQLRDSISNTSGKVNVILQSYISRAHVEDFTL 884 Query: 295 ECKATDKHIEESFIWRLLHELARVYKSVEEVNTVVLQKCLTPESVFVQRKWRTSHQLFQF 474 I R L E+A + L K + +R+W H L QF Sbjct: 885 TSDTNYVAQNAGRITRALFEIAMSRTWASAFTILSLNKSID------RRQWSFEHPLLQF 938 Query: 475 D 477 D Sbjct: 939 D 939 >SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 780 Score = 25.0 bits (52), Expect = 9.5 Identities = 15/50 (30%), Positives = 26/50 (52%) Frame = +1 Query: 157 NEVKIISQVLSANLIRYYDTILHSPSKTLYFVLEYNSWRNVQELIEECKA 306 N K+ Q S+N I SPS + E+ S+ N+++L+++C A Sbjct: 683 NICKLSLQKFSSNAIEQCIRTA-SPSTREQMLQEFLSFPNIEQLLDDCYA 731 >SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual Length = 1339 Score = 25.0 bits (52), Expect = 9.5 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 11/101 (10%) Frame = +1 Query: 19 LKDFQVLDVFCGGTFYKVRHKVTNNIF-AWKAYDCSAFSDEQI-QNV------VNEVKII 174 +KD +L F +K RH++ +I+ K Y S+ S Q+ QN+ N+ Sbjct: 15 IKDTDILSYFDANLPFKKRHQIVRSIYHGLKYYIYSSTSIIQVWQNIQDFISTKNDNAAF 74 Query: 175 SQVLSANLIRYYDTILH---SPSKTLYFVLEYNSWRNVQEL 288 +++ ++RY T H T + +E + ++++ EL Sbjct: 75 RELVYNLMMRYVSTQKHLSIIERHTFFQTIEKDPFQDIAEL 115 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,686,382 Number of Sequences: 5004 Number of extensions: 54591 Number of successful extensions: 172 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 169 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 172 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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