Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1286
(650 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.) 73 2e-13
SB_31780| Best HMM Match : Pkinase (HMM E-Value=0) 52 3e-07
SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39) 42 3e-04
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 40 0.002
SB_41707| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.029
SB_42528| Best HMM Match : Pkinase (HMM E-Value=1.3e-13) 36 0.029
SB_10639| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.20
SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.47
SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_27705| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.9
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_41039| Best HMM Match : DUF1508 (HMM E-Value=3.1) 28 5.7
>SB_47579| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 316
Score = 73.3 bits (172), Expect = 2e-13
Identities = 39/147 (26%), Positives = 78/147 (53%), Gaps = 5/147 (3%)
Frame = +1
Query: 10 SEKLKDFQVLDVFCGGTF---YKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQ 180
S +L D++ L+ G++ K+R K N + W D S+ + Q +V+EV ++ +
Sbjct: 3 SGRLHDYEELERIGSGSYGICKKIRRKKDNKVLVWMELDYGQMSETEKQMLVSEVNLLRE 62
Query: 181 VLSANLIRYYDTILHSPSKTLYFVLEYNSWRNVQELIEECKATDKHIEESFIWRLLHELA 360
+ +++RYYD I+ + T+Y V+E+ ++ LI++ K ++ E +W+LL++L
Sbjct: 63 LKHPHIVRYYDRIIDRTNTTIYIVMEFCENGDLGALIKKHKREKRYTAEDLVWKLLYQLV 122
Query: 361 RVYKSV--EEVNTVVLQKCLTPESVFV 435
+ + VL + L P +VF+
Sbjct: 123 LAVQECHRRKDGGHVLHRDLKPANVFL 149
>SB_31780| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 964
Score = 52.4 bits (120), Expect = 3e-07
Identities = 34/130 (26%), Positives = 63/130 (48%)
Frame = +1
Query: 55 GTFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQVLSANLIRYYDTILHSPS 234
GT Y R V N + K + E+ Q+ +NEVK++S N+IRYYD+ +
Sbjct: 16 GTVYLCRRLVDNFLVIIKQIPVEEMTKEERQSALNEVKVLSMFQHPNIIRYYDSFVQ--E 73
Query: 235 KTLYFVLEYNSWRNVQELIEECKATDKHIEESFIWRLLHELARVYKSVEEVNTVVLQKCL 414
K L V+EY + + +++ K ++E I RL ++ + V + +L + L
Sbjct: 74 KALMIVMEYAQGGTIYDYLQQ--RGGKLMDEDEILRLFVQILLALRHVHKGQ--ILHRDL 129
Query: 415 TPESVFVQRK 444
+++ + +K
Sbjct: 130 KTQNILLNKK 139
>SB_54232| Best HMM Match : Pkinase (HMM E-Value=1.1e-39)
Length = 1123
Score = 42.3 bits (95), Expect = 3e-04
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Frame = +1
Query: 28 FQVLDVFCGGTF---YKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQVLSANL 198
+Q +D+ GTF + V + + ++A K + +A E +NEVKI+S + N+
Sbjct: 4 YQKIDIIGKGTFGSAWLVESRQSKRLYALKELNATAMPSEDRHLALNEVKILSTLKHRNI 63
Query: 199 IRYYDTILHSPSKTLYFVLEY 261
+RY D + Y V+EY
Sbjct: 64 VRYRDAF--EETGRFYIVMEY 82
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/106 (26%), Positives = 49/106 (46%), Gaps = 4/106 (3%)
Frame = +1
Query: 28 FQVLDVFCGGTFYKVR---HKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQVLSANL 198
++++ G F KV+ H T A K D + + +Q + EV+I+ + N+
Sbjct: 83 YRLIKTIGKGNFAKVKLAKHVPTGKEVAIKIIDKTQLNPSSLQKLFREVRIMKFLDHPNI 142
Query: 199 IRYYDTILHSPSKTLYFVLEYNSWRNVQE-LIEECKATDKHIEESF 333
++ Y+ I KTLY V+EY S V + L+ + +K F
Sbjct: 143 VKLYEVI--ETDKTLYLVMEYASGGEVFDYLVAHGRMKEKEARAKF 186
>SB_41707| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 35.9 bits (79), Expect = 0.029
Identities = 21/68 (30%), Positives = 35/68 (51%)
Frame = +1
Query: 181 VLSANLIRYYDTILHSPSKTLYFVLEYNSWRNVQELIEECKATDKHIEESFIWRLLHELA 360
V NL+ YY I + S T V EY + + +++++ + +K I E IW+ HEL
Sbjct: 132 VAHPNLMSYY--IKFAQSGTQIVVFEYPPFA-LPDILDKLRRDNKRIPEFLIWKAFHELC 188
Query: 361 RVYKSVEE 384
V K + +
Sbjct: 189 SVLKYLHD 196
>SB_42528| Best HMM Match : Pkinase (HMM E-Value=1.3e-13)
Length = 255
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/66 (30%), Positives = 33/66 (50%)
Frame = +1
Query: 13 EKLKDFQVLDVFCGGTFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQVLSA 192
E+++ ++L GGT YK H T I A K + Q Q +++E++I Q S
Sbjct: 36 EQIQHLEILGYGNGGTVYKAIHLTTRRIIAVKVIPLDVTPEVQRQ-IISEMEISFQCASP 94
Query: 193 NLIRYY 210
+I +Y
Sbjct: 95 YIIEFY 100
>SB_10639| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 269
Score = 33.1 bits (72), Expect = 0.20
Identities = 21/81 (25%), Positives = 44/81 (54%)
Frame = +1
Query: 58 TFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQVLSANLIRYYDTILHSPSK 237
T +K + K+T+NI A K + + EV ++ + AN++ +DT+ H+ K
Sbjct: 135 TVFKGKSKLTDNIVALKEIRLE-HEEGAPCTAIREVSLLKGLKHANIVTLHDTV-HT-QK 191
Query: 238 TLYFVLEYNSWRNVQELIEEC 300
+L V EY +++++ +++C
Sbjct: 192 SLTLVFEYLE-KDLKQYMDDC 211
>SB_26383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1142
Score = 31.9 bits (69), Expect = 0.47
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 7/107 (6%)
Frame = +1
Query: 55 GTFYKVRHKVTNNIFAWK------AYDCSAFSDE-QIQNVVNEVKIISQVLSANLIRYYD 213
G YK R+K N+ K A +DE ++++ + E+ I+S+ NL+ ++
Sbjct: 236 GKVYKDRYKTKGNVAQHKTESSLSAAKIIIVNDENELEDFMVEIDILSECKHKNLVGLFE 295
Query: 214 TILHSPSKTLYFVLEYNSWRNVQELIEECKATDKHIEESFIWRLLHE 354
T LH L+ +LE+ S + +L+ E + E + R L E
Sbjct: 296 TFLHDGK--LWMMLEFCSGGALDDLMLELERGLNEPEIRAVTRQLFE 340
>SB_28982| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1287
Score = 30.3 bits (65), Expect = 1.4
Identities = 21/82 (25%), Positives = 41/82 (50%)
Frame = +1
Query: 127 FSDEQIQNVVNEVKIISQVLSANLIRYYDTILHSPSKTLYFVLEYNSWRNVQELIEECKA 306
FS ++ N+ EVK + ++ N+++ + I + LYFV EY Q + K
Sbjct: 6 FSWDECINL-REVKSLRKLSHTNIVKLKEVIRENDH--LYFVFEYMKENLYQMMKNRDKL 62
Query: 307 TDKHIEESFIWRLLHELARVYK 372
+ + + I+++L LA ++K
Sbjct: 63 LPESVIRNVIYQILQGLAFIHK 84
>SB_27705| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +1
Query: 13 EKLKDFQVLDVFCGGTFYKVRHKVTNNIFAWKAYDCSAFSDEQIQNVVNEVKIISQ 180
E+++ ++L GGT YK H T I A K + Q Q +++E++I Q
Sbjct: 36 EQIQHLEILGYGNGGTVYKAIHLTTRRIIAVKVIPLDVTPEVQRQ-IISEMEISFQ 90
>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5445
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2
Query: 401 CRNA*RQNQSLCSENGELRINCFNLTATGST 493
C A +N +C+ENG+L NC N T+TG T
Sbjct: 3624 CSGAPCKNGGICTENGDL-FNC-NCTSTGFT 3652
>SB_41039| Best HMM Match : DUF1508 (HMM E-Value=3.1)
Length = 137
Score = 28.3 bits (60), Expect = 5.7
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 304 PCIPRSILEHYATNYIQGQSTTSWMENAVWYRNI 203
PC PRS L Y+++ + S+ S E VW R +
Sbjct: 45 PCKPRSDLGSYSSSIVDSVSSYSIDELVVWERKL 78
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,265,921
Number of Sequences: 59808
Number of extensions: 417407
Number of successful extensions: 1106
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 987
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1101
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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