Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1286
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   3.4  
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    23   3.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   4.5  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   5.9  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   5.9  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +2

Query: 395 LCCRNA*RQNQSLCSENGELRIN 463
           +C R   R+++ +C+ NG++  N
Sbjct: 105 VCMRKCPRRHRPVCASNGKIYAN 127


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = +1

Query: 220 LHSPSKT---LYFVLEYNSWRNVQELIEEC 300
           LHS  +T   LYFV+EY +  ++   I++C
Sbjct: 50  LHSCFQTMDRLYFVMEYVNGGDLMYQIQQC 79


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 11/29 (37%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
 Frame = -2

Query: 346 GDAK*SFPLCACLWP---CIPRSILEHYA 269
           GD+   F  C C WP    IP+   E +A
Sbjct: 570 GDSLERFDFCGCGWPQHMLIPKGNKEGFA 598


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 303 GHRQAHRGKLYLASPARVGS 362
           GH+Q+H G    +SP+ V S
Sbjct: 805 GHQQSHHGLHINSSPSSVQS 824


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 168 FNFVYYVLYLFITE 127
           FN +Y+++YL I++
Sbjct: 419 FNLMYWIIYLHISD 432


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/14 (42%), Positives = 12/14 (85%)
 Frame = -3

Query: 168 FNFVYYVLYLFITE 127
           FN +Y+++YL I++
Sbjct: 419 FNLMYWIIYLHISD 432


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 253 GQSTTSWMENAVWYR 209
           GQ+   W +NA++Y+
Sbjct: 18  GQNNKGWWKNAIFYQ 32


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,248
Number of Sequences: 438
Number of extensions: 3648
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)