Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1284
(642 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 27 0.13
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 27 0.13
DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulati... 25 0.40
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 24 0.93
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 24 0.93
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 24 0.93
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 24 0.93
DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein. 23 2.1
AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory recept... 22 3.7
U14732-1|AAC46491.1| 322|Tribolium castaneum fushi-tarazu protein. 21 6.5
AY043292-2|AAK96032.1| 290|Tribolium castaneum homeodomain tran... 21 6.5
AF321227-1|AAK16421.1| 290|Tribolium castaneum Ftz protein. 21 6.5
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 27.1 bits (57), Expect = 0.13
Identities = 13/45 (28%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = -2
Query: 176 HYLHTH--TFFR*WNKILDKYLFKLENNYRAMTV-TENIRYKLIF 51
HYL+ + TF WN+++++YL +E++ + ++ +++R K++F
Sbjct: 1186 HYLNRNEETF---WNELIEQYLHPIEDDKKKVSAELKDLRDKMVF 1227
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 27.1 bits (57), Expect = 0.13
Identities = 13/45 (28%), Positives = 31/45 (68%), Gaps = 3/45 (6%)
Frame = -2
Query: 176 HYLHTH--TFFR*WNKILDKYLFKLENNYRAMTV-TENIRYKLIF 51
HYL+ + TF WN+++++YL +E++ + ++ +++R K++F
Sbjct: 1186 HYLNRNEETF---WNELIEQYLHPIEDDKKKVSAELKDLRDKMVF 1227
>DQ490059-1|ABF22614.1| 947|Tribolium castaneum short gastrulation
protein.
Length = 947
Score = 25.4 bits (53), Expect = 0.40
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = -1
Query: 474 SFYLIKK*ERSRTLEFIVSDAEI-NQFVL 391
SFY+ K R R+L+F+ S+ I +FVL
Sbjct: 182 SFYISDKAARPRSLQFVDSEGNILEEFVL 210
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 24.2 bits (50), Expect = 0.93
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 143 WNKILDKYLFKLENN 99
W +LDKYL+ ++ N
Sbjct: 1236 WKDLLDKYLYPIDEN 1250
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 24.2 bits (50), Expect = 0.93
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 143 WNKILDKYLFKLENN 99
W +LDKYL+ ++ N
Sbjct: 1236 WKDLLDKYLYPIDEN 1250
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 24.2 bits (50), Expect = 0.93
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 143 WNKILDKYLFKLENN 99
W +LDKYL+ ++ N
Sbjct: 1236 WKDLLDKYLYPIDEN 1250
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 24.2 bits (50), Expect = 0.93
Identities = 7/15 (46%), Positives = 11/15 (73%)
Frame = -2
Query: 143 WNKILDKYLFKLENN 99
W +LDKYL+ ++ N
Sbjct: 1236 WKDLLDKYLYPIDEN 1250
>DQ414247-1|ABD63009.2| 414|Tribolium castaneum paired protein.
Length = 414
Score = 23.0 bits (47), Expect = 2.1
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -1
Query: 501 GVSKCCSESSFYLIKK*ERSRT 436
GVS C SE L +K RSRT
Sbjct: 204 GVSDCDSEPGIPLKRKQRRSRT 225
>AM292361-1|CAL23173.2| 373|Tribolium castaneum gustatory receptor
candidate 40 protein.
Length = 373
Score = 22.2 bits (45), Expect = 3.7
Identities = 10/34 (29%), Positives = 15/34 (44%)
Frame = -2
Query: 251 LATILNNIGIVNNRVNDTKNTMLPNHYLHTHTFF 150
+ +I+N + + V D T N Y H FF
Sbjct: 328 ILSIVNTCSQIPSEVEDKYTTYFLNTYPHLFNFF 361
>U14732-1|AAC46491.1| 322|Tribolium castaneum fushi-tarazu protein.
Length = 322
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = +1
Query: 355 YSHGNYLFHYIAENKLVYFC 414
Y+H N ++H + E + C
Sbjct: 39 YTHNNEMYHRVKEEPIYESC 58
>AY043292-2|AAK96032.1| 290|Tribolium castaneum homeodomain
transcription factor Fushitarazu protein.
Length = 290
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = +1
Query: 355 YSHGNYLFHYIAENKLVYFC 414
Y+H N ++H + E + C
Sbjct: 39 YTHNNEMYHRVKEEPIYESC 58
>AF321227-1|AAK16421.1| 290|Tribolium castaneum Ftz protein.
Length = 290
Score = 21.4 bits (43), Expect = 6.5
Identities = 6/20 (30%), Positives = 11/20 (55%)
Frame = +1
Query: 355 YSHGNYLFHYIAENKLVYFC 414
Y+H N ++H + E + C
Sbjct: 39 YTHNNEMYHSVKEEPIYESC 58
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,328
Number of Sequences: 336
Number of extensions: 3243
Number of successful extensions: 14
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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