Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1284
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|...    50   3e-07
SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase...    26   4.0  

>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 209

 Score = 50.0 bits (114), Expect = 3e-07
 Identities = 29/113 (25%), Positives = 53/113 (46%), Gaps = 3/113 (2%)
 Frame = +1

Query: 307 AEQILSKIPPHDDK-LTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRR-- 477
           A+ IL ++ P  +K  +   G+Y FHY+ +N + Y CI +  + R  AF +L E+     
Sbjct: 29  AKLILKRLSPTSEKRASIESGDYTFHYLIDNGICYLCICEQSYPRKLAFSYLEELAGEFW 88

Query: 478 XXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKK 636
                        PYA   +F   +    + Y+  R  DN+ +++ EL ++ +
Sbjct: 89  NSFGEEALQPGLRPYAF-VQFDTFMQKSKRVYNTPRANDNLDKLNTELKDVTR 140


>SPACUNK12.02c |cmk1||calcium/calmodulin-dependent protein kinase
           Cmk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/44 (36%), Positives = 24/44 (54%)
 Frame = -2

Query: 347 LSSWGGIFDKICSATSVKLP*QVAYLARTTVPLATILNNIGIVN 216
           L++ G +FD+IC+  S       A L RTT      L++ GIV+
Sbjct: 110 LATGGELFDRICAKGSF-YEADAAALMRTTTSAVKYLHDNGIVH 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,602
Number of Sequences: 5004
Number of extensions: 53692
Number of successful extensions: 149
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)