Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1284
(642 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_01_0303 - 3337454-3337544,3338358-3338521,3338624-3338805,333... 99 1e-21
06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334 93 1e-19
02_05_1125 + 34282559-34282796,34283247-34283437,34283540-342836... 78 7e-15
03_06_0347 + 33293915-33294104,33295143-33295284,33295365-332954... 72 3e-13
07_01_0680 + 5128023-5128212,5128629-5128667,5129496-5129637,512... 62 4e-10
03_01_0459 + 3533718-3533916,3535009-3535150,3535290-3535410,353... 61 8e-10
12_02_1272 + 27475302-27475491,27476792-27476876,27477076-274771... 60 2e-09
07_01_0987 + 8320205-8320472,8321549-8321690,8321773-8321893,832... 50 2e-06
01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011 46 3e-05
01_05_0508 - 22804809-22805231,22805775-22806797 38 0.005
04_04_0232 + 23794109-23794399,23795290-23796621 29 3.1
11_05_0010 - 18356835-18357080,18357475-18357672,18357780-183580... 28 5.5
10_08_1005 - 22179407-22180122,22180210-22180653,22180737-221808... 28 5.5
06_01_0867 - 6600847-6601413,6601954-6602181 28 5.5
>10_01_0303 -
3337454-3337544,3338358-3338521,3338624-3338805,
3339088-3339322
Length = 223
Score = 99 bits (238), Expect = 1e-21
Identities = 50/140 (35%), Positives = 82/140 (58%), Gaps = 7/140 (5%)
Frame = +1
Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH-DDKLTYSHGNYLFHYI---- 387
M I++++VARGTVVLA+++ GN VA +IL K+PP + +L ++ Y+FH +
Sbjct: 1 MAIVYAVVARGTVVLAEFSAVSGNAGAVARRILEKLPPDAESRLCFAQDRYIFHVLRSPP 60
Query: 388 --AENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATE 561
A + L + C+ +D F R FL+L +I+ R + YAMN EF RVL +
Sbjct: 61 PAAADGLTFLCMANDTFGRRIPFLYLEDIQMRFIKNYGRIAHNALAYAMNDEFSRVLHQQ 120
Query: 562 MKHYSESRDLDNISRVHGEL 621
M+++S + D ++R+ GE+
Sbjct: 121 MEYFSSNPSADTLNRLRGEI 140
>06_01_0521 - 3773749-3773931,3774295-3774485,3775115-3775334
Length = 197
Score = 93.5 bits (222), Expect = 1e-19
Identities = 47/139 (33%), Positives = 76/139 (54%), Gaps = 2/139 (1%)
Frame = +1
Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH--DDKLTYSHGNYLFHYIAEN 396
M IL+++VARGTVVLA+++ N VA Q+L ++P D ++Y+ Y+FH +
Sbjct: 1 MAILYAVVARGTVVLAEHSAAATNAGAVARQVLERLPGGGADSHVSYTQDRYVFHAKRTD 60
Query: 397 KLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYS 576
+ C+ D+ R F FL +I R + Y MN EF RVL+ +M +YS
Sbjct: 61 GITALCMADEAAGRRIPFAFLEDIHGRFVKTYGRAALTSLAYGMNDEFSRVLSQQMDYYS 120
Query: 577 ESRDLDNISRVHGELDELK 633
+ D I+R+ GE+ +++
Sbjct: 121 NDPNADRINRMRGEISQVR 139
>02_05_1125 +
34282559-34282796,34283247-34283437,34283540-34283629,
34283630-34283793,34284139-34284352
Length = 298
Score = 77.8 bits (183), Expect = 7e-15
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 7/144 (4%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQ-GNFTEVAEQILSKIPPHDD------KLTYSHGNYLFHYI 387
I ++ VARG VV+A++ N VA QIL ++ D ++Y+ ++FH
Sbjct: 4 IQYAAVARGAVVMAEHGDAAFPNAGAVARQILDRLSAGDGGGGGDCNISYTQDLHVFHVK 63
Query: 388 AENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMK 567
+ + C+ DD R F FL +I R + YAMN EF RVL +M
Sbjct: 64 RTDGVTALCMADDAAGRRIPFAFLEDIHGRFVKTYGRAALTALAYAMNDEFSRVLGQQMD 123
Query: 568 HYSESRDLDNISRVHGELDELKKY 639
+YS + D ISR+ GE+D+ Y
Sbjct: 124 YYSNDPNADRISRMRGEMDQYFSY 147
>03_06_0347 +
33293915-33294104,33295143-33295284,33295365-33295485,
33295590-33295652,33296524-33296553,33297411-33297905
Length = 346
Score = 72.1 bits (169), Expect = 3e-13
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
++++ VARGTV+LA+Y GNFT +A Q L K+P ++K TY+ + F+Y+ E+ Y
Sbjct: 6 LIYAFVARGTVILAEYTEFTGNFTTIASQCLMKLPASNNKFTYNCDGHTFNYLVEDGFTY 65
Query: 409 FCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGRVLATEMKH-YSES 582
+ + R FL+ +K ++N +FG L M++
Sbjct: 66 CVVAVESVGRQIPIAFLDRVKDDFTKRYAGGKAATAAANSLNRDFGSKLKEHMQYCVDHP 125
Query: 583 RDLDNISRVHGELDELK 633
++ +++V ++ E+K
Sbjct: 126 EEISKLAKVKAQVSEVK 142
>07_01_0680 +
5128023-5128212,5128629-5128667,5129496-5129637,
5129727-5129847,5129951-5130013,5130114-5130203,
5130572-5130619,5131114-5131260
Length = 279
Score = 62.1 bits (144), Expect = 4e-10
Identities = 40/150 (26%), Positives = 70/150 (46%), Gaps = 15/150 (10%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAEN---- 396
++++ VARGTVVLA+Y GNFT +A Q L K+P ++K TY+ + F+Y+ E+
Sbjct: 6 LIYAFVARGTVVLAEYTEFTGNFTTIAAQCLQKLPASNNKFTYNCDGHTFNYLVEDGFSS 65
Query: 397 ---------KLVYFCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGR 546
L Y + + R FL+ +K ++N EFG
Sbjct: 66 NRIGILGIQGLAYCVVAVESVGRQIPIAFLDRVKEDFTKRYGGGKAATAAANSLNREFGS 125
Query: 547 VLATEMKH-YSESRDLDNISRVHGELDELK 633
L M++ ++ +++V ++ E+K
Sbjct: 126 KLKEHMQYCVDHPEEISKLAKVKAQVSEVK 155
>03_01_0459 +
3533718-3533916,3535009-3535150,3535290-3535410,
3535513-3535575,3535677-3535823
Length = 223
Score = 60.9 bits (141), Expect = 8e-10
Identities = 35/137 (25%), Positives = 65/137 (47%), Gaps = 2/137 (1%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+++S VARG VVLA +A GNF VA Q L K+P +++ +Y+ + F+Y + Y
Sbjct: 9 LVYSFVARGAVVLADHAEVSGNFASVAAQCLQKLPSTNNRHSYNCDGHTFNYHVHDGFTY 68
Query: 409 FCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGRVLATEMKHY-SES 582
+ + R F+ +K ++ E+G L MK+ +
Sbjct: 69 CVVATESAGRQLPVGFIERVKEDFSKKYSGGKAKNATANSLKREYGPKLKEHMKYCDAHP 128
Query: 583 RDLDNISRVHGELDELK 633
++D +++V ++ E+K
Sbjct: 129 EEIDKLAKVKAQVTEVK 145
>12_02_1272 +
27475302-27475491,27476792-27476876,27477076-27477196,
27477443-27477586
Length = 179
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/81 (33%), Positives = 47/81 (58%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+++++VARGTVVLA++ GNF ++A Q L K+P D++LTY+ + F+++ Y
Sbjct: 6 LIYAMVARGTVVLAEHTAYAGNFRDIAAQCLQKLPAGDNRLTYTCDAHTFNFLIHQGYAY 65
Query: 409 FCITDDKFQRSRAFLFLNEIK 471
+ + R L+ IK
Sbjct: 66 CVVATESSGRQIPLALLDMIK 86
>07_01_0987 +
8320205-8320472,8321549-8321690,8321773-8321893,
8322190-8322264,8322784-8322846,8322934-8323086
Length = 273
Score = 50.0 bits (114), Expect = 2e-06
Identities = 31/146 (21%), Positives = 66/146 (45%), Gaps = 11/146 (7%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDD---------KLTYSHGNYLFH 381
++++ VARGT VLA+Y GNF +A Q L ++P + +Y+ + F+
Sbjct: 23 LIYAFVARGTAVLAEYTEFTGNFPALAAQCLQRLPASGGGGSGGGAPARFSYACDGHTFN 82
Query: 382 YIAENKLVYFCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGRVLAT 558
++ Y + + ++ + FL +K + ++N E+G V+
Sbjct: 83 FLLHRGYAYCVVAKESVPKNVSVAFLERLKDDFMKRYGGGKADTALAKSLNKEYGPVIKQ 142
Query: 559 EMKH-YSESRDLDNISRVHGELDELK 633
M++ S +++ +V ++ E+K
Sbjct: 143 HMQYVLDHSEEIEKTLKVQAQVSEVK 168
>01_01_0945 - 7439776-7440026,7440109-7440269,7440824-7441011
Length = 199
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Frame = +1
Query: 319 LSKIPPHDDKLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXX 498
LSK +++ G YLFHYI E ++ Y + D + + AF +L ++K
Sbjct: 43 LSKGQHEASRMSIETGPYLFHYIIEGRVCYLTMCDCSYPKKLAFQYLEDLKNEFERVNGN 102
Query: 499 XXXXXI-PYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDEL 630
PYA +F + K Y ++R N+++++ EL E+
Sbjct: 103 QIETAARPYAF-IKFDTFIQKTKKLYLDTRTQRNLAKLNDELYEV 146
>01_05_0508 - 22804809-22805231,22805775-22806797
Length = 481
Score = 38.3 bits (85), Expect = 0.005
Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 199 VSFTRLFTMPILFSIVARGTVVLAKYATCQGNFTEVA--EQILSKIPPHDDKLTYSHGNY 372
VSF R F +P+L ++ G + A+C N T VA ++I + IP H + Y + Y
Sbjct: 311 VSFIRSFNLPLL--LLGGGGYTINHVASCWCNETAVAIGKEIPNDIPKHGFDVFYKNQEY 368
Query: 373 LFHYIAENK 399
HY E K
Sbjct: 369 KLHYKLETK 377
>04_04_0232 + 23794109-23794399,23795290-23796621
Length = 540
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 146 T*RRCACVNSDLVT-LCSLCRLRDYSQCLYYSVSWLEAL 259
T RR A +++ LV+ + LC LR Y+ C SW AL
Sbjct: 105 THRRWADLHAGLVSRVADLCALRGYASCRAVCASWRAAL 143
>11_05_0010 - 18356835-18357080,18357475-18357672,18357780-18358046,
18358870-18359067,18359151-18359417,18359524-18359724,
18359807-18361363,18361499-18361859,18362602-18363467
Length = 1386
Score = 28.3 bits (60), Expect = 5.5
Identities = 19/68 (27%), Positives = 29/68 (42%)
Frame = +1
Query: 178 FGNIVFFVSFTRLFTMPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTY 357
FG + ++ P L +I +G VVLAK C G E + + +PPH +
Sbjct: 1058 FGRAGWCFDAIGIYVNPDLQTIKDKGKVVLAKIGPCGGKGGEACDIM---VPPHHLESVT 1114
Query: 358 SHGNYLFH 381
N + H
Sbjct: 1115 ICSNIVIH 1122
>10_08_1005 - 22179407-22180122,22180210-22180653,22180737-22180861,
22180939-22181169,22181250-22181805,22181896-22182312,
22182405-22183216,22183653-22183738,22184464-22184534,
22184553-22185573,22186018-22186062,22186252-22186326,
22186797-22186871
Length = 1557
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Frame = +1
Query: 217 FTMPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIP-PHDDKLTYSHGNYL 375
F +P SI R KY+TC ++ + LSKIP P D + Y+
Sbjct: 1395 FVLPDSSSIYKRQKTSEGKYSTCSFGDGQLTSKCLSKIPLPADQHTSLDDVQYI 1448
>06_01_0867 - 6600847-6601413,6601954-6602181
Length = 264
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = -2
Query: 218 NNRVNDTKNTMLPNHYLHTHTFFR*WNKILDKYL-FKLEN 102
N+ +D + + N Y + FF W+KIL Y+ + LEN
Sbjct: 203 NSAYHDIHHQLYGNKYNFSQPFFVMWDKILGTYMPYTLEN 242
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,233,766
Number of Sequences: 37544
Number of extensions: 286259
Number of successful extensions: 573
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 563
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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