Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1284
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)                      83   1e-16
SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)                43   2e-04
SB_30796| Best HMM Match : SNARE (HMM E-Value=0.45)                    31   1.1  
SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_39225| Best HMM Match : NIF (HMM E-Value=0)                         27   9.8  
SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)          27   9.8  
SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_33522| Best HMM Match : SCPU (HMM E-Value=6.8)
          Length = 295

 Score = 83.4 bits (197), Expect = 1e-16
 Identities = 37/81 (45%), Positives = 50/81 (61%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 402
           MP+ +S++ARG  +L  YA   GNF +V   IL KIP +D K TY  G+Y FH I E+ L
Sbjct: 102 MPLYYSLIARGGTILVDYAETTGNFQQVTYTILEKIPGNDTKCTYVSGSYQFHVIVEDGL 161

Query: 403 VYFCITDDKFQRSRAFLFLNE 465
           VY C+ D +F +   + FL E
Sbjct: 162 VYLCMADKEFGKKDPYAFLEE 182


>SB_34372| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 252

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%)
 Frame = +1

Query: 307 AEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXX 483
           A+ +  K+  H   + +   GN +FHYI EN + +  +TD  F +  AF FL +I     
Sbjct: 34  AKMLFRKLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDIASEFN 93

Query: 484 XXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKK 636
                       PY    EF   +    ++Y +SR   N++R++ EL ++++
Sbjct: 94  REYGHQVSRATRPYPF-IEFDTYMQKAKRNYQDSRTRRNLNRLNDELVDVQR 144


>SB_493| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = +1

Query: 307 AEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEI 468
           A+ +  K+  H   + +   GN +FHYI EN + +  +TD  F +  AF FL +I
Sbjct: 34  AKMLFRKLTNHSPARSSIESGNMMFHYILENSVCFLTLTDKPFSKRAAFSFLEDI 88


>SB_30796| Best HMM Match : SNARE (HMM E-Value=0.45)
          Length = 299

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/40 (32%), Positives = 26/40 (65%)
 Frame = +1

Query: 49  KKINLYLIFSVTVIAR*LFSSLNKYLSKILFHYLKKVCVC 168
           KK+N Y +  + ++AR +++   +YL+K  F YL ++ +C
Sbjct: 39  KKVNRYKLIYIRIVARDMYTEGWRYLTK--FSYLMELALC 76


>SB_25040| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 456

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 18  RYTINIPNSFQENQFIPNIFCHGHC 92
           R+ IN+P+ F+ N ++   FC  HC
Sbjct: 142 RFNINMPHKFKVNNYLSPTFC-DHC 165


>SB_39225| Best HMM Match : NIF (HMM E-Value=0)
          Length = 1772

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 242  ILNNIGIVNNRVNDTKNTMLPNHYLHTHTFFR*W-NKILDK 123
            I   + +V   + D ++ +LP H +  HT FR W +K L K
Sbjct: 1090 IHTTVQLVPANMKDVQHFVLPGHPMWYHTKFRPWAHKFLQK 1130


>SB_11339| Best HMM Match : TGF_beta (HMM E-Value=5.60519e-45)
          Length = 481

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 346 KLTYSHGNYLFHYIAENKLVYFCITDDKFQR 438
           + T +  NY+ HY   N L+ F ++++KF+R
Sbjct: 376 RCTLNSSNYV-HYRINNTLILFYVSENKFKR 405


>SB_35887| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 983

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 278 AYLARTTVPLATILNNIGIVNNRVNDTKN 192
           AY+A++T  + T L+N+      VND K+
Sbjct: 117 AYMAKSTAAVQTALDNLASAEEDVNDLKS 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,517,557
Number of Sequences: 59808
Number of extensions: 357756
Number of successful extensions: 879
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)