SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1284
         (642 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X92396-1|CAA63133.1|  220|Homo sapiens ORF protein.                   180   3e-45
BC056141-1|AAH56141.1|  220|Homo sapiens synaptobrevin-like 1 pr...   180   3e-45
AJ295938-1|CAC16891.1|  260|Homo sapiens synaptobrevin like prot...   180   3e-45
AJ271736-1|CAB96816.1|  220|Homo sapiens synaptobrevin-like 1 pr...   180   3e-45
AK222794-1|BAD96514.1|  220|Homo sapiens synaptobrevin-like 1 va...   178   1e-44
AJ549301-1|CAD70593.2|  179|Homo sapiens tetanus insensitive VAM...    75   4e-20

>X92396-1|CAA63133.1|  220|Homo sapiens ORF protein.
          Length = 220

 Score =  180 bits (439), Expect = 3e-45
 Identities = 81/137 (59%), Positives = 103/137 (75%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 402
           M ILF++VARGT +LAK+A C GNF EV EQIL+KIP  ++KLTYSHGNYLFHYI ++++
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRI 60

Query: 403 VYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSES 582
           VY CITDD F+RSRAF FLNEIK+R            +PYAMNSEF  VLA ++KH+SE+
Sbjct: 61  VYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120

Query: 583 RDLDNISRVHGELDELK 633
           + LD +     ++DELK
Sbjct: 121 KGLDKVMETQAQVDELK 137


>BC056141-1|AAH56141.1|  220|Homo sapiens synaptobrevin-like 1
           protein.
          Length = 220

 Score =  180 bits (439), Expect = 3e-45
 Identities = 81/137 (59%), Positives = 103/137 (75%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 402
           M ILF++VARGT +LAK+A C GNF EV EQIL+KIP  ++KLTYSHGNYLFHYI ++++
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRI 60

Query: 403 VYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSES 582
           VY CITDD F+RSRAF FLNEIK+R            +PYAMNSEF  VLA ++KH+SE+
Sbjct: 61  VYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120

Query: 583 RDLDNISRVHGELDELK 633
           + LD +     ++DELK
Sbjct: 121 KGLDKVMETQAQVDELK 137


>AJ295938-1|CAC16891.1|  260|Homo sapiens synaptobrevin like protein
           1B protein.
          Length = 260

 Score =  180 bits (439), Expect = 3e-45
 Identities = 81/137 (59%), Positives = 103/137 (75%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 402
           M ILF++VARGT +LAK+A C GNF EV EQIL+KIP  ++KLTYSHGNYLFHYI ++++
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRI 60

Query: 403 VYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSES 582
           VY CITDD F+RSRAF FLNEIK+R            +PYAMNSEF  VLA ++KH+SE+
Sbjct: 61  VYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120

Query: 583 RDLDNISRVHGELDELK 633
           + LD +     ++DELK
Sbjct: 121 KGLDKVMETQAQVDELK 137


>AJ271736-1|CAB96816.1|  220|Homo sapiens synaptobrevin-like 1
           protein protein.
          Length = 220

 Score =  180 bits (439), Expect = 3e-45
 Identities = 81/137 (59%), Positives = 103/137 (75%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 402
           M ILF++VARGT +LAK+A C GNF EV EQIL+KIP  ++KLTYSHGNYLFHYI ++++
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRI 60

Query: 403 VYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSES 582
           VY CITDD F+RSRAF FLNEIK+R            +PYAMNSEF  VLA ++KH+SE+
Sbjct: 61  VYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSEN 120

Query: 583 RDLDNISRVHGELDELK 633
           + LD +     ++DELK
Sbjct: 121 KGLDKVMETQAQVDELK 137


>AK222794-1|BAD96514.1|  220|Homo sapiens synaptobrevin-like 1
           variant protein.
          Length = 220

 Score =  178 bits (434), Expect = 1e-44
 Identities = 81/137 (59%), Positives = 102/137 (74%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 402
           M ILF++VARGT +LAK+A C GNF EV EQIL+KIP  ++KLTYSHGNYLFHYI ++++
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRI 60

Query: 403 VYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSES 582
           VY CITDD F+RSRAF FLNEIK+R             PYAMNSEF  VLA ++KH+SE+
Sbjct: 61  VYLCITDDDFERSRAFNFLNEIKKRFQTTYGSRAQTAPPYAMNSEFSSVLAAQLKHHSEN 120

Query: 583 RDLDNISRVHGELDELK 633
           + LD +     ++DELK
Sbjct: 121 KGLDKVMETQAQVDELK 137


>AJ549301-1|CAD70593.2|  179|Homo sapiens tetanus insensitive VAMP
           (Ti-VAMP) protein.
          Length = 179

 Score = 75.4 bits (177), Expect(2) = 4e-20
 Identities = 34/70 (48%), Positives = 46/70 (65%)
 Frame = +1

Query: 424 DKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSESRDLDNIS 603
           + F+RSRAF FLNEIK+R            +PYAMNSEF  VLA ++KH+SE++ LD + 
Sbjct: 27  EDFERSRAFNFLNEIKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHSENKGLDKVM 86

Query: 604 RVHGELDELK 633
               ++DELK
Sbjct: 87  ETQAQVDELK 96



 Score = 42.7 bits (96), Expect(2) = 4e-20
 Identities = 19/31 (61%), Positives = 24/31 (77%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQ 315
           M ILF++VARGT +LAK+A C GNF E  E+
Sbjct: 1   MAILFAVVARGTTILAKHAWCGGNFLEDFER 31


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,464,364
Number of Sequences: 237096
Number of extensions: 1682179
Number of successful extensions: 2770
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2770
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -