Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1284
         (642 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071695-1|AAL49317.1|  218|Drosophila melanogaster RH15778p pro...   175   4e-44
AE013599-938|AAF58892.1|  218|Drosophila melanogaster CG1599-PA ...   175   4e-44
AY069680-1|AAL39825.1|  211|Drosophila melanogaster LD45288p pro...    42   0.001
AL031583-8|CAA20899.2|  211|Drosophila melanogaster EG:34F3.8 pr...    42   0.001
AE014298-112|AAF45554.1|  211|Drosophila melanogaster CG7359-PA ...    42   0.001

>AY071695-1|AAL49317.1|  218|Drosophila melanogaster RH15778p
           protein.
          Length = 218

 Score =  175 bits (426), Expect = 4e-44
 Identities = 76/137 (55%), Positives = 105/137 (76%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 402
           MPIL+S+++RGT VLAK+A C GNF EV E I+ +I  H+ K+TY+HG+YL HY  ENKL
Sbjct: 1   MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDYLIHYTCENKL 60

Query: 403 VYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSES 582
           VY CITD++F+RSRAFLFL +IK++            I Y+MN+EF ++LA +M ++S+S
Sbjct: 61  VYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAYSMNTEFSKILAQQMVYFSQS 120

Query: 583 RDLDNISRVHGELDELK 633
           R++D ISRVHG++DELK
Sbjct: 121 REVDTISRVHGQIDELK 137


>AE013599-938|AAF58892.1|  218|Drosophila melanogaster CG1599-PA
           protein.
          Length = 218

 Score =  175 bits (426), Expect = 4e-44
 Identities = 76/137 (55%), Positives = 105/137 (76%)
 Frame = +1

Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKL 402
           MPIL+S+++RGT VLAK+A C GNF EV E I+ +I  H+ K+TY+HG+YL HY  ENKL
Sbjct: 1   MPILYSVISRGTTVLAKFAECVGNFAEVTEHIIGRIGVHNHKMTYTHGDYLIHYTCENKL 60

Query: 403 VYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSES 582
           VY CITD++F+RSRAFLFL +IK++            I Y+MN+EF ++LA +M ++S+S
Sbjct: 61  VYMCITDNEFERSRAFLFLADIKQKFIQTYGLQVATAIAYSMNTEFSKILAQQMVYFSQS 120

Query: 583 RDLDNISRVHGELDELK 633
           R++D ISRVHG++DELK
Sbjct: 121 REVDTISRVHGQIDELK 137


>AY069680-1|AAL39825.1|  211|Drosophila melanogaster LD45288p
           protein.
          Length = 211

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = +1

Query: 292 NFTEVAEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEI 468
           ++   A+ +  K+  H   + +   G YLFHY+ EN + Y  + D  + +  AF +L ++
Sbjct: 32  DYQNQAKMLFRKLGTHSPARCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDL 91

Query: 469 KRRXXXXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKK 636
            +               PYA   EF   +    K  ++ R   NIS ++ +L ++++
Sbjct: 92  AQEFHANYGRRVNSVTRPYAF-IEFDVYIQKAKKQLTDRR--RNISNINTQLQDVQR 145


>AL031583-8|CAA20899.2|  211|Drosophila melanogaster EG:34F3.8
           protein.
          Length = 211

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = +1

Query: 292 NFTEVAEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEI 468
           ++   A+ +  K+  H   + +   G YLFHY+ EN + Y  + D  + +  AF +L ++
Sbjct: 32  DYQNQAKMLFRKLGTHSPARCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDL 91

Query: 469 KRRXXXXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKK 636
            +               PYA   EF   +    K  ++ R   NIS ++ +L ++++
Sbjct: 92  AQEFHANYGRRVNSVTRPYAF-IEFDVYIQKAKKQLTDRR--RNISNINTQLQDVQR 145


>AE014298-112|AAF45554.1|  211|Drosophila melanogaster CG7359-PA
           protein.
          Length = 211

 Score = 41.5 bits (93), Expect = 0.001
 Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
 Frame = +1

Query: 292 NFTEVAEQILSKIPPHDD-KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEI 468
           ++   A+ +  K+  H   + +   G YLFHY+ EN + Y  + D  + +  AF +L ++
Sbjct: 32  DYQNQAKMLFRKLGTHSPARCSIETGPYLFHYLIENDVCYLVMVDKMYSKRLAFNYLEDL 91

Query: 469 KRRXXXXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESRDLDNISRVHGELDELKK 636
            +               PYA   EF   +    K  ++ R   NIS ++ +L ++++
Sbjct: 92  AQEFHANYGRRVNSVTRPYAF-IEFDVYIQKAKKQLTDRR--RNISNINTQLQDVQR 145


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,460,091
Number of Sequences: 53049
Number of extensions: 526781
Number of successful extensions: 1327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1327
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2703623850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)