Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1284
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g22360.1 68418.m02609 synaptobrevin family protein similar to... 104 4e-23
At2g25340.1 68415.m03031 synaptobrevin family protein similar to... 102 2e-22
At4g32150.1 68417.m04573 synaptobrevin family protein similar to... 101 5e-22
At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated memb... 100 9e-22
At1g04760.1 68414.m00472 synaptobrevin family protein similar to... 81 8e-16
At2g33120.1 68415.m04060 synaptobrevin-related protein / vesicl... 77 8e-15
At2g32670.1 68415.m03994 synaptobrevin family protein similar to... 77 1e-14
At1g04750.1 68414.m00470 synaptobrevin family protein similar to... 75 4e-14
At3g54300.1 68416.m06001 synaptobrevin family protein similar to... 73 2e-13
At4g15780.1 68417.m02402 synaptobrevin-related family protein si... 71 5e-13
At2g33110.1 68415.m04059 synaptobrevin family protein similar to... 70 1e-12
At5g52990.1 68418.m06581 vesicle-associated membrane protein-rel... 46 3e-05
At4g27840.1 68417.m03998 expressed protein 45 4e-05
At1g11890.1 68414.m01371 vesicle transport protein SEC22, putati... 45 4e-05
At5g52270.1 68418.m06487 vesicle transport protein-related simil... 42 3e-04
At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger) fa... 37 0.010
At4g10170.2 68417.m01665 synaptobrevin-related family protein si... 33 0.21
At4g10170.1 68417.m01664 synaptobrevin-related family protein si... 33 0.21
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin... 30 1.5
At1g63350.1 68414.m07161 disease resistance protein (CC-NBS-LRR ... 29 3.5
At5g46410.1 68418.m05712 NLI interacting factor (NIF) family pro... 28 6.1
At5g43090.1 68418.m05260 pumilio/Puf RNA-binding domain-containi... 28 6.1
At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein heli... 28 6.1
>At5g22360.1 68418.m02609 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 221
Score = 104 bits (250), Expect = 4e-23
Identities = 51/139 (36%), Positives = 80/139 (57%), Gaps = 2/139 (1%)
Frame = +1
Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH--DDKLTYSHGNYLFHYIAEN 396
M I++++VARGTVVLA+++ GN V +IL K+ P D++L +S Y+FH + +
Sbjct: 1 MAIVYAVVARGTVVLAEFSAVTGNTGAVVRRILEKLSPEISDERLCFSQDRYIFHILRSD 60
Query: 397 KLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYS 576
L + C+ +D F R F +L EI R YAMN EF RVL +M+ +S
Sbjct: 61 GLTFLCMANDTFGRRVPFSYLEEIHMRFMKNYGKVAHNAPAYAMNDEFSRVLHQQMEFFS 120
Query: 577 ESRDLDNISRVHGELDELK 633
+ +D ++RV GE+ E++
Sbjct: 121 SNPSVDTLNRVRGEVSEIR 139
>At2g25340.1 68415.m03031 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 102 bits (245), Expect = 2e-22
Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Frame = +1
Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH-DDKLTYSHGNYLFHYIAENK 399
M IL+++VARGTVVLA+ +T N + +A+QIL KIP + D ++YS Y+FH +
Sbjct: 1 MSILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDG 60
Query: 400 LVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSE 579
L C+ D+ R F FL +I +R YAMN EF RVL ++++YS
Sbjct: 61 LTVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRAIHSAQAYAMNDEFSRVLNQQIEYYSN 120
Query: 580 SRDLDNISRVHGELDELK 633
+ D ISR+ GE+++++
Sbjct: 121 DPNADTISRIKGEMNQVR 138
>At4g32150.1 68417.m04573 synaptobrevin family protein similar to
Synaptobrevin-like protein 1 (SP:P51809) [Homo sapiens]
Length = 219
Score = 101 bits (241), Expect = 5e-22
Identities = 48/138 (34%), Positives = 81/138 (58%), Gaps = 1/138 (0%)
Frame = +1
Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIP-PHDDKLTYSHGNYLFHYIAENK 399
M IL+++VARGTVVL+++ N + +A+QIL K+P +D ++YS Y+FH +
Sbjct: 1 MAILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDG 60
Query: 400 LVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSE 579
L C+ ++ R F FL +I +R + YAMN EF RVL+ ++ +YS
Sbjct: 61 LTVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRAVHTALAYAMNEEFSRVLSQQIDYYSN 120
Query: 580 SRDLDNISRVHGELDELK 633
+ D I+R+ GE+++++
Sbjct: 121 DPNADRINRIKGEMNQVR 138
>At5g11150.1 68418.m01303 synaptobrevin / vesicle-associated
membrane protein 713 (VAMP713) identified as AtVAMP713
by Sanderfoot, A.A., et al. in Plant Physiol. 124:
1558-69 (2000); similar to Vesicle-associated membrane
protein 722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; synaptobrevin-like
protein Sybl1, Mus musculus, EMBL:MMU133536
Length = 221
Score = 100 bits (239), Expect = 9e-22
Identities = 48/139 (34%), Positives = 82/139 (58%), Gaps = 2/139 (1%)
Frame = +1
Query: 223 MPILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPH--DDKLTYSHGNYLFHYIAEN 396
M I+F++VARGTVVL++++ N + +++QIL K+P + D ++YS Y+FH +
Sbjct: 1 MAIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTD 60
Query: 397 KLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYS 576
L C+ D+ R+ F FL++I +R Y+MN EF RVL+ +M+ YS
Sbjct: 61 GLTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRAIHSAQAYSMNDEFSRVLSQQMEFYS 120
Query: 577 ESRDLDNISRVHGELDELK 633
+ D +SR+ GE+ +++
Sbjct: 121 NDPNADRMSRIKGEMSQVR 139
>At1g04760.1 68414.m00472 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 220
Score = 80.6 bits (190), Expect = 8e-16
Identities = 42/137 (30%), Positives = 72/137 (52%), Gaps = 2/137 (1%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+++S VARGTV+LA+Y +GNFT VA Q L K+P ++K TY+ + F+Y+A+N Y
Sbjct: 6 LIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLADNGFTY 65
Query: 409 FCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSE-S 582
+ + R FL +K ++N EFG L M++ ++
Sbjct: 66 CVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKLKEHMQYCADHP 125
Query: 583 RDLDNISRVHGELDELK 633
++ +S+V ++ E+K
Sbjct: 126 EEISKLSKVKAQVTEVK 142
>At2g33120.1 68415.m04060 synaptobrevin-related protein /
vesicle-associated membrane protein 722 (VAMP722) (SAR1)
identical to r to Vesicle-associated membrane protein
722 (AtVAMP722) Synaptobrevin-related protein 1
(SP:P47192) {Arabidopsis thaliana}; identical to cDNA
synaptobrevin-related protein (SAR1) GI:600709
Length = 221
Score = 77.4 bits (182), Expect = 8e-15
Identities = 40/137 (29%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+++S VARGTV+L ++ +GNFT +A Q L K+P ++K TY+ + F+Y+ EN Y
Sbjct: 6 LIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTY 65
Query: 409 FCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESR 585
+ D R FL +K ++N EFG L M++ +
Sbjct: 66 CVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHP 125
Query: 586 D-LDNISRVHGELDELK 633
D + +++V ++ E+K
Sbjct: 126 DEISKLAKVKAQVSEVK 142
>At2g32670.1 68415.m03994 synaptobrevin family protein similar to
vesicle-associated membrane protein 7 [Rattus
norvegicus] GI:9502258, SP|P51809 Synaptobrevin-like
protein 1 {Homo sapiens}; contains Pfam profile PF00957:
Synaptobrevin
Length = 285
Score = 76.6 bits (180), Expect = 1e-14
Identities = 41/137 (29%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+++S VARGTV+L +Y +GNFT VA Q L K+P ++K TY+ + F+Y+ EN Y
Sbjct: 71 LIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVENGFTY 130
Query: 409 FCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESR 585
+ + R FL +K ++N EFG L M++ +
Sbjct: 131 CVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKLKEHMQYCVDHP 190
Query: 586 D-LDNISRVHGELDELK 633
D + +++V ++ E+K
Sbjct: 191 DEISKLAKVKAQVTEVK 207
>At1g04750.1 68414.m00470 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana};
Length = 219
Score = 74.9 bits (176), Expect = 4e-14
Identities = 39/137 (28%), Positives = 69/137 (50%), Gaps = 2/137 (1%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+++S VARGTV+L ++ +GNFT +A Q L K+P ++K TY+ + F+Y+ E+ Y
Sbjct: 6 LIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVEDGFTY 65
Query: 409 FCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXI-PYAMNSEFGRVLATEMKHYSESR 585
+ D R FL +K ++N EFG L M++ +
Sbjct: 66 CVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKLKEHMQYCMDHP 125
Query: 586 D-LDNISRVHGELDELK 633
D + +++V ++ E+K
Sbjct: 126 DEISKLAKVKAQVSEVK 142
>At3g54300.1 68416.m06001 synaptobrevin family protein similar to
vesicle-associated membrane protein 7B (At VAMP7B),
Arabidopsis thaliana, EMBL:AF025333
Length = 240
Score = 72.9 bits (171), Expect = 2e-13
Identities = 31/81 (38%), Positives = 51/81 (62%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+++S VA+GTVVLA++ GNF+ +A Q L K+P + K TYS + F+++ +N V+
Sbjct: 6 LIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVDNGFVF 65
Query: 409 FCITDDKFQRSRAFLFLNEIK 471
+ D+ RS F+FL +K
Sbjct: 66 LVVADESTGRSVPFVFLERVK 86
>At4g15780.1 68417.m02402 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}
Length = 194
Score = 71.3 bits (167), Expect = 5e-13
Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 3/137 (2%)
Frame = +1
Query: 232 LFSIVARGTVVLAKYATCQGNFTEVAEQILSKIP-PHDDKLTYSHGNYLFHYIAENKLVY 408
++S VARGT++LA+Y GNF +A Q L K+P + K TY+ ++ F+++ E+ Y
Sbjct: 7 IYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLVEDAYAY 66
Query: 409 FCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGRVLATEMKH-YSES 582
+ D + + FL +K I ++N EFG V+ M + +
Sbjct: 67 CVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVMKEHMNYIVDHA 126
Query: 583 RDLDNISRVHGELDELK 633
+++ + +V ++ E+K
Sbjct: 127 EEIEKLIKVKAQVSEVK 143
>At2g33110.1 68415.m04059 synaptobrevin family protein similar to
Vesicle-associated membrane protein 722 (AtVAMP722)
Synaptobrevin-related protein 1 (SP:P47192) {Arabidopsis
thaliana}
Length = 217
Score = 70.1 bits (164), Expect = 1e-12
Identities = 38/137 (27%), Positives = 66/137 (48%), Gaps = 2/137 (1%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+ +S +ARGTV+L ++ +GNFT VA Q L +P ++K TY+ + F+ + EN Y
Sbjct: 6 LFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVENGFTY 65
Query: 409 FCITDDKFQRSRAFLFLNEIKRR-XXXXXXXXXXXXIPYAMNSEFGRVLATEMKHYSESR 585
+ D R FL +K ++N EFG L M++ +
Sbjct: 66 CVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNLKEHMQYCMDHP 125
Query: 586 D-LDNISRVHGELDELK 633
D + N+++ ++ E+K
Sbjct: 126 DEISNLAKAKAQVSEVK 142
>At5g52990.1 68418.m06581 vesicle-associated membrane
protein-related contains weak similarity to
vesicle-associated membrane protein 722 (AtVAMP722)
(Synaptobrevin- related protein 1) (Swiss-Prot:P47192)
[Arabidopsis thaliana]
Length = 272
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 2/81 (2%)
Frame = +1
Query: 235 FSIVARGTVVLAKYATCQGNFTE-VAEQILSKIPPHDDKLTYS-HGNYLFHYIAENKLVY 408
++ +A+GTVVLA++ + Q E +A + + PPH +++ H I ++ VY
Sbjct: 10 YTCIAKGTVVLAEFVSRQEPGIEAIALRCIENTPPHHSMFSHTVHKKTYTFAIDDDSFVY 69
Query: 409 FCITDDKFQRSRAFLFLNEIK 471
F I+D+ ++ +F LN ++
Sbjct: 70 FSISDESMEKPESFWVLNRLR 90
>At4g27840.1 68417.m03998 expressed protein
Length = 260
Score = 45.2 bits (102), Expect = 4e-05
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Frame = +1
Query: 229 ILFSIVARGTVVLAKYATCQG-NFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLV 405
+ +S +A+GTV+LA++A+ + ++A + + +PPH ++++ + I +
Sbjct: 8 LFYSCIAKGTVILAEFASKEEPGIEDLALRCIENVPPHHSMISHTVHKRTYALIIDGLFS 67
Query: 406 YFCITDDKFQRSRAFLFLNEIK 471
YF I D+ +S + N +K
Sbjct: 68 YFAILDEVVAKSESVWLFNRLK 89
>At1g11890.1 68414.m01371 vesicle transport protein SEC22, putative
identified as SEC22 by Raikhel, NV, et al. in Plant
Physiol. 124: 1558-69 (2000); similar to vesicle
trafficking protein gb|U91538 from Mus musculus; ESTs
gb|F15494 and gb|F14097 come from this gene
Length = 218
Score = 45.2 bits (102), Expect = 4e-05
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 1/96 (1%)
Frame = +1
Query: 346 KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXI-PY 522
+++ G Y+FHYI E ++ Y + D + + AF +L ++K PY
Sbjct: 52 RMSVETGPYVFHYIIEGRVCYLTMCDRSYPKKLAFQYLEDLKNEFERVNGPNIETAARPY 111
Query: 523 AMNSEFGRVLATEMKHYSESRDLDNISRVHGELDEL 630
A +F + K Y ++R NI++++ EL E+
Sbjct: 112 AF-IKFDTFIQKTKKLYQDTRTQRNIAKLNDELYEV 146
>At5g52270.1 68418.m06487 vesicle transport protein-related similar
to vesicle trafficking protein sec22b [Mus musculus]
GI:1907386
Length = 214
Score = 41.9 bits (94), Expect = 3e-04
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Frame = +1
Query: 346 KLTYSHGNYLFHYIAENKLVYFCITDDKFQRSRAFLFLNEIKRRXXXXXXXXXXXXI--P 519
K+T ++ FH++ E K+ Y ++D + R F +L + + I P
Sbjct: 54 KMTILLDHHSFHFLVEKKICYIALSDSSYPRKLLFNYLQNLNKELDKLDEKALIQKISKP 113
Query: 520 YAMNSEFGRVLATEMKHYSESRDLDNISRVH 612
Y+ FG+++ K Y ++R N+S+++
Sbjct: 114 YSF-IRFGKIIGRIRKQYIDTRTQANLSKLN 143
>At1g33480.1 68414.m04144 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 508
Score = 37.1 bits (82), Expect = 0.010
Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 235 FSIVARGTVVLAKY--ATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVY 408
+ V+R ++ Y A N +A L K PP + G F ++ ++ VY
Sbjct: 263 YCCVSRDNQIMYAYNNAGDHRNNESLAALCLEKTPPFHKWYFETRGKKTFGFLMKDDFVY 322
Query: 409 FCITDDKFQRSRAFLFLNEIK 471
F I DD F++S FL +++
Sbjct: 323 FAIVDDVFKKSSVLDFLEKLR 343
>At4g10170.2 68417.m01665 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}; vesicle-associated membrane
protein 7B, Arabidopsis thaliana, AF025333
Length = 254
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +1
Query: 235 FSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYFC 414
+ V+R +L Y +A L K PP + G F ++ + VYF
Sbjct: 10 YCCVSRDNQILYSYNGGDQTNESLAALCLEKSPPFHTWYFETIGKRRFGFLIGDGFVYFA 69
Query: 415 ITDDKFQRSRAFLFLNEIK 471
I D+ +RS FL ++
Sbjct: 70 IVDEVLKRSSVLKFLEHLR 88
>At4g10170.1 68417.m01664 synaptobrevin-related family protein
similar to Vesicle-associated membrane protein 722
(AtVAMP722) Synaptobrevin-related protein 1 (SP:P47192)
{Arabidopsis thaliana}; vesicle-associated membrane
protein 7B, Arabidopsis thaliana, AF025333
Length = 254
Score = 32.7 bits (71), Expect = 0.21
Identities = 20/79 (25%), Positives = 32/79 (40%)
Frame = +1
Query: 235 FSIVARGTVVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYFC 414
+ V+R +L Y +A L K PP + G F ++ + VYF
Sbjct: 10 YCCVSRDNQILYSYNGGDQTNESLAALCLEKSPPFHTWYFETIGKRRFGFLIGDGFVYFA 69
Query: 415 ITDDKFQRSRAFLFLNEIK 471
I D+ +RS FL ++
Sbjct: 70 IVDEVLKRSSVLKFLEHLR 88
>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
protein-related contains Pfam profiles PF03107: DC1
domain, weak hit to PF00628: PHD-finger
Length = 513
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 116 INIYPKFYSIT*RRCACVNS-DLVTLCSLCRLRDYSQCLY 232
+ ++P+ S+T C VN L +CS+C +S C++
Sbjct: 102 LTLFPRQASLTCNVCGLVNKLHLTYVCSICNFAAHSDCIH 141
>At1g63350.1 68414.m07161 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 898
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 259 VVLAKYATCQGNFTEVAEQILSKIPPHDDKLTYSHGNYLFHYIAENKLVYF 411
VV++K + E+A+++ D K Y G YL++++ + + V F
Sbjct: 209 VVVSKEVNVENILDEIAQKVHISGEKWDTKYKYQKGVYLYNFLRKMRFVLF 259
>At5g46410.1 68418.m05712 NLI interacting factor (NIF) family
protein contains Pfam profile PF03031: NLI interacting
factor
Length = 453
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/40 (30%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +1
Query: 514 IPYA-MNSEFGRVLATEMKHYSESRDLDNISRVHGELDEL 630
+PY M S+ +VL KH + +R+ ++S++ G+L+ +
Sbjct: 1 MPYIEMKSKISKVLGVCKKHKASTRNSCSLSKISGDLESI 40
>At5g43090.1 68418.m05260 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA-binding protein
Length = 527
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Frame = +1
Query: 301 EVAEQILSKIPPHDDKLTYS-HGNYLFHYIAE 393
E+ ++++S++ H KL + HGNY+ Y+ E
Sbjct: 389 EIRQRLISEVIEHALKLCLNCHGNYVVQYVVE 420
>At2g42270.1 68415.m05232 U5 small nuclear ribonucleoprotein
helicase, putative
Length = 2172
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +1
Query: 352 TYSHGNYLFHYIAENKLVYFCITDDKFQRSRAF 450
T++HGNY Y+A K + + D QR + F
Sbjct: 555 TFNHGNYKIVYVAPMKALVAEVVDSLSQRLKDF 587
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,004,533
Number of Sequences: 28952
Number of extensions: 254210
Number of successful extensions: 608
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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