Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1281
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.       34   9e-04
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    27   0.17 
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    25   0.52 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   1.6  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    23   1.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   6.4  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      21   6.4  

>AY531876-1|AAT08870.1|   38|Tribolium castaneum unknown protein.
          Length = 38

 Score = 34.3 bits (75), Expect = 9e-04
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +3

Query: 432 NRQRTGCGKKLFDFMLKDTESDVHALAIDGPSHK 533
           +RQRTG GK+LF+ ML+    +   +AI  PS K
Sbjct: 3   SRQRTGLGKRLFEHMLQTESIEPVKMAIGRPSEK 36


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 26.6 bits (56), Expect = 0.17
 Identities = 21/68 (30%), Positives = 32/68 (47%)
 Frame = -2

Query: 500  DVALRVLEHEIEKFLPASGALAVADHVEVEDAERLQLAHLFLVVEQKQVLATNLQHADCL 321
            +    V E+E        G +A A  +  ED  ++ LA+L LVV    V+A  L     +
Sbjct: 1569 NAGFNVAEYEFATLTVTGGTIAPAREIPKEDTFQIILANLNLVV---PVVAAVL--VIIV 1623

Query: 320  ALTVFCIL 297
            A+ V C+L
Sbjct: 1624 AIIVICVL 1631


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 25.0 bits (52), Expect = 0.52
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +3

Query: 204 YSSAAQGLNRVITTGEKLR 260
           YS+A Q LN+++  GEK R
Sbjct: 552 YSAATQDLNKLLRKGEKWR 570


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +1

Query: 352 STCFCSTTRNKC 387
           +TCFC    NKC
Sbjct: 694 TTCFCENGNNKC 705



 Score = 21.0 bits (42), Expect = 8.5
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -1

Query: 144 CFLQKCPSLSC 112
           CF  +CP ++C
Sbjct: 705 CFTMECPQVTC 715


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +2

Query: 476 AQGHGERRPRTSHRRALAQDGAVXEAQLP 562
           A+  G   P   HR ALAQ   V   Q+P
Sbjct: 294 ARADGAGGPLHDHRPALAQQRRVAAVQVP 322


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 557 LPAWSVSSAKTTISLFRPSSLRSP 628
           LP+ S S A  ++S+  P  L+SP
Sbjct: 701 LPSPSTSVASPSVSVASPYMLQSP 724


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 557 LPAWSVSSAKTTISLFRPSSLRSP 628
           LP+ S S A  ++S+  P  L+SP
Sbjct: 593 LPSPSTSVASPSVSVASPYMLQSP 616


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,401
Number of Sequences: 336
Number of extensions: 2747
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)