Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1281
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   3.9  
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p...    26   5.2  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   6.8  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    25   6.8  
SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyce...    25   9.0  

>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 108  DYNLMTDTFEGNIRTVRMLQDSLSKLIDVLGEYSSAAQGLNRVITT 245
            D + + D+   ++RT+R L+DS++ L       S+  + L  V+T+
Sbjct: 1633 DLSNIKDSLSEDLRTLRSLEDSVASLQKECKIKSNTVESLQDVLTS 1678


>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 926

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 26/101 (25%), Positives = 47/101 (46%), Gaps = 7/101 (6%)
 Frame = -3

Query: 313 PFFASLSLRIYTTCDGQRRSFSPVVITRLRPCAADEYSPRTSISFD-----RLSCSILTV 149
           PF +  +  ++TTC+G+RR     +         D Y+    ++       R S   L+ 
Sbjct: 625 PFVSFQTAMLHTTCNGERRIRVLTISLPTTNSMTDLYASADQVAIAQYLTVRASEKALSS 684

Query: 148 LMFPSKVSVI-KL*SMRVISSLNISFTGTIHSI-VQISTNL 32
            +  ++ S+I KL  +  +   N++   T  +I +QISTNL
Sbjct: 685 TLNEARDSIISKLVEILEVYKKNLAGQNTGAAIPLQISTNL 725


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = -2

Query: 392 LAHLFLVVEQKQVLATNLQHADCLALTVFCILVFKDIHNMRWAEAKFFP 246
           +A+ FL  +  Q   +  Q+    ++ +F       I N+ W +A+ FP
Sbjct: 414 IAYHFLPADTTQNTNSGWQYVVLASIIIFLASYASGIGNIPWQQAELFP 462


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 27  LYKFVEICTMEWMVPVNEML 86
           LYK +E C M++ +P+  +L
Sbjct: 714 LYKILEACFMQFRIPIQHVL 733


>SPCC1620.13 |||phosphoglycerate mutase family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 282

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +3

Query: 186 IDVLGEYSSAAQGLNRVITTGEKLRLCPSHVVYILKDKDAKNGEG 320
           +D++  YSS  +   R      K+  CP ++   L +KD  + EG
Sbjct: 99  LDIVCVYSSPQKRAKRTAEEITKVANCPLYISDFLMEKDLGSLEG 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,455,848
Number of Sequences: 5004
Number of extensions: 46682
Number of successful extensions: 92
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)