Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1281
         (630 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1402 - 26786011-26786128,26786263-26786516,26787505-267877...    32   0.43 
04_04_0069 + 22506885-22508354                                         29   2.3  
07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439           29   3.0  
03_02_0472 - 8737955-8738580,8738704-8738767,8739090-8739239,873...    28   5.3  
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290...    28   7.0  
07_01_0173 - 1212858-1213805,1214982-1215642,1215699-1215724,121...    27   9.3  
02_02_0398 - 9777596-9778146,9778229-9778400,9778522-9778639,977...    27   9.3  
01_01_0889 + 7008077-7009261                                           27   9.3  

>08_02_1402 -
           26786011-26786128,26786263-26786516,26787505-26787732,
           26788920-26789759
          Length = 479

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/52 (34%), Positives = 22/52 (42%)
 Frame = +2

Query: 446 RMREETFRFHAQGHGERRPRTSHRRALAQDGAVXEAQLPAWSVSSAKTTISL 601
           R   ET   H Q H +  PRT  R + A  G + E Q P     +A T   L
Sbjct: 187 RREAETAHPHTQPHSDLSPRTPRRTSAAASGRLQEKQAPPPLPHAAATAAPL 238


>04_04_0069 + 22506885-22508354
          Length = 489

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/54 (31%), Positives = 22/54 (40%)
 Frame = +2

Query: 446 RMREETFRFHAQGHGERRPRTSHRRALAQDGAVXEAQLPAWSVSSAKTTISLFR 607
           R R E  R   + H  RRP ++ RR  A  G       P W  S+A     + R
Sbjct: 30  RQRGEERRIRRRHHRIRRPASATRRVAAGSGVSAAGSEPWWCGSTADAATPMAR 83


>07_01_0853 + 6982185-6983593,6985926-6986497,6987139-6988439
          Length = 1093

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 240 TTGEKLRLCPSHVVYILKDKDAKNGEGEAV 329
           T  EK RL PS+  Y L+ ++AK  EG+ V
Sbjct: 364 TKPEKRRLAPSNYRYFLRGQNAKAKEGDLV 393


>03_02_0472 -
           8737955-8738580,8738704-8738767,8739090-8739239,
           8739311-8739422,8739686-8739708
          Length = 324

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/58 (32%), Positives = 26/58 (44%)
 Frame = -3

Query: 349 RPIFSMPTASPSPFFASLSLRIYTTCDGQRRSFSPVVITRLRPCAADEYSPRTSISFD 176
           R  +S    SPSP+    S   Y T   +RRS+S    +R R  +   Y    S S+D
Sbjct: 180 RQSYSPYGRSPSPYGRRRSYSPYDTRGSRRRSYSSYRGSRYRSRSPYRYRRERSCSYD 237


>02_01_0399 -
           2905026-2905406,2905522-2905630,2905809-2907475,
           2907650-2907790,2907870-2908043,2908577-2908851,
           2909592-2909755,2910409-2910536,2910628-2910734,
           2911747-2911880,2912266-2912441,2912530-2914257,
           2915084-2915239,2915328-2915486,2915581-2915751,
           2915931-2916047,2916417-2916473,2916565-2916680,
           2916790-2916916,2917862-2917945
          Length = 2056

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +2

Query: 503 RTSHR-RALAQDGAVXEAQLPAWSVSSAKTTISLFR 607
           +T HR + +  DG + E  LPA S+   KT    FR
Sbjct: 150 KTVHRIKVMLYDGVLLELDLPALSLKEIKTADGAFR 185


>07_01_0173 -
           1212858-1213805,1214982-1215642,1215699-1215724,
           1216037-1216121,1216382-1216404,1216463-1216465
          Length = 581

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 333 CRLPRPHRFLHPCL*GYTQHAMGRGEVFP 247
           CR+P  HR L  C+      A+G+GE  P
Sbjct: 451 CRIPVMHRHLISCVTARLFVAVGKGEALP 479


>02_02_0398 -
           9777596-9778146,9778229-9778400,9778522-9778639,
           9778751-9779014,9779287-9779354,9779520-9780145,
           9780257-9780412,9780528-9780625,9780741-9780832,
           9780940-9781011
          Length = 738

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 316 SPFFASLSLRIYTTCDGQRRSFSPVVIT 233
           SPFF + S R+Y    G+++   P V+T
Sbjct: 15  SPFFTNASSRLYIVYMGEKKHDDPSVVT 42


>01_01_0889 + 7008077-7009261
          Length = 394

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
 Frame = +3

Query: 450 CGKKLFDFMLKDTESDVHALAIDGPSHKMEQXLKRNYRRGASRP-PKQQF 596
           CG++ F    +   SD  A A+ G +      L R +RRG   P P  +F
Sbjct: 83  CGRESFLASSRRDYSDAAATALVGRTESFSTALDRLHRRGGGTPLPPSRF 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,745,549
Number of Sequences: 37544
Number of extensions: 334165
Number of successful extensions: 826
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)