Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1281
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    29   2.4  
SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)               29   3.1  
SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)           27   9.5  

>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/60 (25%), Positives = 35/60 (58%)
 Frame = -3

Query: 322 SPSPFFASLSLRIYTTCDGQRRSFSPVVITRLRPCAADEYSPRTSISFDRLSCSILTVLM 143
           +P P F +LS R++ + + + R+FS      +  C++  + P +++ +   +C++LT L+
Sbjct: 537 APRPAFQNLSPRLFRSLNNRARAFSSEACFWV-TCSS-HFLPPSAVRYWAKACAVLTCLL 594


>SB_47920| Best HMM Match : Kelch_1 (HMM E-Value=1.9e-34)
          Length = 405

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +3

Query: 180 KLIDVLGEYSSAAQGLNRVITTGE-KLRLCPSHVVYILKDKDAKNGEGEAVGMLKIGRKH 356
           KL   L  ++ A+Q  +RVITTG     +C S V+    +     G G   G     + H
Sbjct: 51  KLFRELWRFNIASQCWSRVITTGPFPSSVCSSCVLLNKGNLIVYGGSGIPFGQSNSAQLH 110

Query: 357 LFLFDDKEQVRELE 398
           + L   KE + ELE
Sbjct: 111 ICLLSKKEWI-ELE 123


>SB_44755| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 317

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 286 SLKTRMQKTVRARQSAC*RLVASTCFCSTTRNKC 387
           S+ TR+Q+T+RA +    +   S+  CS  + KC
Sbjct: 220 SVSTRIQRTLRALRPKAAKYAGSSNMCSQVKLKC 253


>SB_14525| Best HMM Match : Phospholip_A2_1 (HMM E-Value=2.2)
          Length = 462

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 146 QDREDATR*SVKADRCPGRIFISCTRPQPCDHYWGKTSPLPI 271
           +D + AT  S K+D     I I C +  PC H+    +  PI
Sbjct: 217 KDTKSATICSKKSDITEQTIDIMCVKDNPCGHFVHSDNKSPI 258


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,374
Number of Sequences: 59808
Number of extensions: 381595
Number of successful extensions: 867
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)