Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1281
         (630 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical pr...    81   6e-16
AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensor...    81   6e-16
U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical p...    29   2.7  
Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical pr...    28   4.8  
U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo...    28   6.3  
AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.      28   6.3  

>U39854-3|AAA81078.2|  263|Caenorhabditis elegans Hypothetical
           protein W06B11.1 protein.
          Length = 263

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 50/134 (37%), Positives = 76/134 (56%), Gaps = 2/134 (1%)
 Frame = +3

Query: 171 SLSKLIDVLGEYSSAAQGLNRVITTGEKL-RLCPSHVVYILKDKDAKNGEGEAV-GMLKI 344
           ++++ ID LGE SS   G  RVIT  +K+         YI+ +K   NG    + G+L++
Sbjct: 33  AVAQSIDCLGEMSSKFHGWKRVITMYDKIVDHDEEQTTYIMWEK--VNGSKSILKGLLRV 90

Query: 345 GRKHLFLFDDKEQVRELEPLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHALAIDGP 524
           G K L+L D+++     + +C+LDF+VV   QR+G G K+FD MLK     V   A D P
Sbjct: 91  GYKTLYLTDNEQNQYMEKAMCILDFFVVPTEQRSGNGFKMFDEMLKAENVTVDQCAFDKP 150

Query: 525 SHKMEQXLKRNYRR 566
           S  ++Q L++ Y R
Sbjct: 151 SAALQQFLEKYYDR 164


>AF045644-7|AAC02603.1|  262|Caenorhabditis elegans Mechanosensory
           abnormality protein17 protein.
          Length = 262

 Score = 81.0 bits (191), Expect = 6e-16
 Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 1/137 (0%)
 Frame = +3

Query: 153 VRMLQDSLS-KLIDVLGEYSSAAQGLNRVITTGEKLRLCPSHVVYILKDKDAKNGEGEAV 329
           V+ LQD +  + ID L + S+    L   +TT EKL +     +Y+    D +      +
Sbjct: 23  VKQLQDPIVYEAIDNLAKLSAHCLQLRTPLTTCEKL-INSDSTLYLSWKYDEEEKVSRLM 81

Query: 330 GMLKIGRKHLFLFDDKEQVRELEPLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHAL 509
           G  K+GRK LFL+D + Q  E E LC+LDFYV  + QR G G+++ D+M     ++ + L
Sbjct: 82  GFAKVGRKKLFLYDSQMQTYEGEILCLLDFYVHFSCQRQGVGQQILDYMFSQEHTEPYQL 141

Query: 510 AIDGPSHKMEQXLKRNY 560
           A+D PS  +   + + Y
Sbjct: 142 ALDNPSVTLLGFMSQKY 158


>U80445-11|AAB37801.2|  479|Caenorhabditis elegans Hypothetical
           protein C50F2.8 protein.
          Length = 479

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 30/125 (24%), Positives = 52/125 (41%), Gaps = 2/125 (1%)
 Frame = +3

Query: 225 LNRVITTGEKLRLCPSHVVYILKDKDAKNGEGEAVGMLKIGRKHLFLFDDKEQVR--ELE 398
           L+++ +  E L  C   ++  +++ + KNG+ +     K         D KE+    E+E
Sbjct: 7   LSQLRSNAENLSRCLHVLLEKIENIEKKNGKEQDADSTKSNGTSSSNKDGKEKFEQVEIE 66

Query: 399 PLCVLDFYVVCNRQRTGCGKKLFDFMLKDTESDVHALAIDGPSHKMEQXLKRNYRRGASR 578
               +D        +TG  K+        T    HALA+DGPS  M   L+ +  +  + 
Sbjct: 67  EKTEID-------PKTGLKKRTIVTERVLTTKTFHALALDGPSPTMTPILRSSGTKNHNY 119

Query: 579 PPKQQ 593
            P  Q
Sbjct: 120 APIHQ 124


>Z50806-4|CAB60296.2| 1214|Caenorhabditis elegans Hypothetical
           protein M79.1b protein.
          Length = 1214

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 26/93 (27%), Positives = 41/93 (44%)
 Frame = -3

Query: 355 CLRPIFSMPTASPSPFFASLSLRIYTTCDGQRRSFSPVVITRLRPCAADEYSPRTSISFD 176
           C  P+F  P ASP    + +S ++    +   RS SP+++   RP       P +  S  
Sbjct: 19  CEDPVFDQPVASPK---SEISSKL---AEEIERSKSPLILEMFRPTFDTFRPPNSDSSTF 72

Query: 175 RLSCSILTVLMFPSKVSVIKL*SMRVISSLNIS 77
           R S S   ++   S  SV  +  M  +SS + S
Sbjct: 73  RGSQSREDLVACSSMNSVNNVHDMNTVSSSSSS 105


>U32305-20|AAK18863.1|  796|Caenorhabditis elegans Worm armadillo
           protein 1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 407 AERLQLAHLFLVVEQKQVLATNLQHADCLALTVFC 303
           +ERL +  LF  + Q +V+  +L  +   ALTVFC
Sbjct: 375 SERLGVVSLFHQIMQNEVIHEDLLWSTMQALTVFC 409


>AF013951-1|AAC47748.1|  796|Caenorhabditis elegans wrm-1 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 407 AERLQLAHLFLVVEQKQVLATNLQHADCLALTVFC 303
           +ERL +  LF  + Q +V+  +L  +   ALTVFC
Sbjct: 375 SERLGVVSLFHQIMQNEVIHEDLLWSTMQALTVFC 409


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,001,014
Number of Sequences: 27780
Number of extensions: 279228
Number of successful extensions: 678
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)