Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1281
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    24   1.1  
DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 vari...    22   5.7  
DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 vari...    22   5.7  
DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid p...    21   7.5  
AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatas...    21   7.5  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.9  

>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +1

Query: 196 WENIHQLHKASTV*SLLGKNFAS 264
           WE +H  H  ST+ S  G  F +
Sbjct: 208 WEIVHMSHSESTIDSKFGLGFTT 230


>DQ384991-1|ABD51779.1|   94|Apis mellifera allergen Api m 6 variant
           2 precursor protein.
          Length = 94

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 295 SLRIYTTCDGQRRSFSPVVITR 230
           S  I++ CDG+ + F P V+ +
Sbjct: 39  SNEIFSRCDGRCQRFCPNVVPK 60


>DQ384990-1|ABD51778.1|   92|Apis mellifera allergen Api m 6 variant
           1 precursor protein.
          Length = 92

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 295 SLRIYTTCDGQRRSFSPVVITR 230
           S  I++ CDG+ + F P V+ +
Sbjct: 39  SNEIFSRCDGRCQRFCPNVVPK 60


>DQ058012-1|AAY57281.1|  373|Apis mellifera venom allergen acid
           phosphatase protein.
          Length = 373

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 369 DDKEQVRELEPLCVLDFYVVCNRQRTGCGK 458
           D+K ++   +P    DFY +   + T  GK
Sbjct: 17  DEKNEMYPKDPYLYYDFYPLERGELTNSGK 46


>AY939855-1|AAX33235.1|  388|Apis mellifera venom acid phosphatase
           precursor protein.
          Length = 388

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +3

Query: 369 DDKEQVRELEPLCVLDFYVVCNRQRTGCGK 458
           D+K ++   +P    DFY +   + T  GK
Sbjct: 32  DEKNEMYPKDPYLYYDFYPLERGELTNSGK 61


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +1

Query: 247 GKNFASAHRMLC 282
           GKN + AH+ LC
Sbjct: 19  GKNASQAHKKLC 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,222
Number of Sequences: 438
Number of extensions: 3237
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)