Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1281
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SD...    28   4.4  
At3g10310.1 68416.m01237 kinesin motor protein-related similar t...    28   5.9  
At5g11980.1 68418.m01401 conserved oligomeric Golgi complex comp...    27   7.8  
At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protei...    27   7.8  

>At3g46170.1 68416.m04996 short-chain dehydrogenase/reductase (SDR)
           family protein contains similarity to
           3-oxoacyl-[acyl-carrier protein] reductase SP:P51831
           from [Bacillus subtilis]
          Length = 288

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 360 FLFDDKEQVRELEPLCVL-DFYVVCNRQRTGCGKKL 464
           F+F +KE +++LEP C L D  V+     +G G+++
Sbjct: 9   FVFGEKEVLKQLEPWCELKDKVVLVTGASSGIGREI 44


>At3g10310.1 68416.m01237 kinesin motor protein-related similar to
           carboxy-terminal kinesin 2 GB:P79955 [Xenopus laevis]
          Length = 897

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 20/64 (31%), Positives = 31/64 (48%)
 Frame = +3

Query: 66  VPVNEMLRDEITRIDYNLMTDTFEGNIRTVRMLQDSLSKLIDVLGEYSSAAQGLNRVITT 245
           +P+ E+   E  ++  NL   T +        LQ  L +L + + E SSAAQG  +V+  
Sbjct: 265 MPLEELPVHEEDQVLKNLFIKTKQDFKEFQVYLQRDLMELGNQMQEMSSAAQGYYKVVEE 324

Query: 246 GEKL 257
             KL
Sbjct: 325 NRKL 328


>At5g11980.1 68418.m01401 conserved oligomeric Golgi complex
           component-related / COG complex component-related
           similar to SP|Q96MW5 Conserved oligomeric Golgi complex
           component 8 {Homo sapiens}; contains Pfam profile
           PF04124: Dor1-like family
          Length = 569

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 4/111 (3%)
 Frame = +3

Query: 42  EICTMEWMVPVNEMLRDEITRIDYNLMTDTFE---GNIRTVRMLQD-SLSKLIDVLGEYS 209
           ++ T+   +PV + L  E+ +   +L++   +    NI+    L+     + I V GEY 
Sbjct: 162 KLATLHPKLPVIQALAAEVRQTTQSLLSQLLQKLRSNIQLPECLRIIGYLRRIGVFGEYE 221

Query: 210 SAAQGLNRVITTGEKLRLCPSHVVYILKDKDAKNGEGEAVGMLKIGRKHLF 362
              Q L          R   + +  IL+D D KN      GM+   R HLF
Sbjct: 222 MRLQFL----------RCREAWLTGILEDLDQKNAYEYLKGMINCHRMHLF 262


>At1g67325.1 68414.m07663 zinc finger (Ran-binding) family protein
           similar to ZIS2 [Homo sapiens] GI:4191329; contains Pfam
           profile PF00641: Zn-finger in Ran binding protein and
           others
          Length = 288

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 212 SCTRPQPCDHYWGKTSPLPI 271
           +CT+P+P DH  GK++P P+
Sbjct: 46  NCTQPRPADHN-GKSAPKPM 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,155,684
Number of Sequences: 28952
Number of extensions: 256896
Number of successful extensions: 599
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)