Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1277
(737 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 0.69
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 28 1.6
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 28 1.6
SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces... 28 1.6
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 26 4.9
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi... 26 6.4
SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 25 8.5
SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces p... 25 8.5
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.1 bits (62), Expect = 0.69
Identities = 24/92 (26%), Positives = 37/92 (40%)
Frame = +2
Query: 317 PTATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSNLRLSSDGVLTVIAPRTPAA 496
PT+TSS+ + TS +T S+ T T T S + T I P P
Sbjct: 140 PTSTSSTSIPIPPTSTS-STDTNSNPLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVPPT 198
Query: 497 TKNERAVPITQTGSGPEGXLRSPLAEVESNET 592
+ + ++PI T + SPL ++ T
Sbjct: 199 STSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 230
Score = 29.1 bits (62), Expect = 0.69
Identities = 22/92 (23%), Positives = 40/92 (43%)
Frame = +2
Query: 317 PTATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSNLRLSSDGVLTVIAPRTPAA 496
PT+TSS+ + TS +++ +S + + T + S S + T I P P
Sbjct: 197 PTSTSSTSIPIPP--TSTSSTDTNSSPLPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPT 254
Query: 497 TKNERAVPITQTGSGPEGXLRSPLAEVESNET 592
+ + ++PI T + SPL ++ T
Sbjct: 255 STSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 286
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
Frame = +2
Query: 320 TATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSNLRLS--SDGVLTVIAPRTPA 493
T+ S+ ++ TS A++ SS T+ T +++ + S + T I P P
Sbjct: 81 TSASTPIITESTSSTSSASTTGSSSSPLPSTSTSCTTSTSIPPTGGSSSLSTPITPTVPP 140
Query: 494 ATKNERAVPITQTGSGPEGXLRSPLAEVESNET 592
+ + ++PI T + +PL ++ T
Sbjct: 141 TSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCT 173
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/60 (38%), Positives = 32/60 (53%)
Frame = +2
Query: 320 TATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSNLRLSSDGVLTVIAPRTPAAT 499
TATSSS ST ++ ++SL SS + TAT + + +SS LT + T AAT
Sbjct: 207 TATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSISSTVSSSTPLT-SSNSTTAAT 265
Score = 27.5 bits (58), Expect = 2.1
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Frame = +2
Query: 320 TATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTAT-LTLSNLRLSSDGVLTVIAP----R 484
+ATSSS ST ++ ++SL SS + TAT +LS+ S+ + +A
Sbjct: 175 SATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSSLSSTAASNSATSSSLASSSLNS 234
Query: 485 TPAATKNERAVPITQTGSGPEGXLRSPLAEVESNET 592
T +AT ++ T + S P S A ++ T
Sbjct: 235 TTSATATSSSISSTVSSSTPLTSSNSTTAATSASAT 270
Score = 25.4 bits (53), Expect = 8.5
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 320 TATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSNLRLSSDGVLTVIAPRTPAAT 499
TATS+S ++ ATS SS +T T+ + S+ L+S T + + A +
Sbjct: 350 TATSASSTPLTSVNSTTATS-ASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPS 408
Query: 500 KNERAV-PITQTGSGPEGXLRSPLAEVESN 586
N +V P + S P S A S+
Sbjct: 409 YNTSSVLPTSSVSSTPLSSANSTTATSASS 438
Score = 25.4 bits (53), Expect = 8.5
Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Frame = +2
Query: 320 TATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSNLRLSSDGVLTVIAPRTPAAT 499
TATS+S ++ ATS SS +T T+ + S+ L+S T + + A +
Sbjct: 464 TATSASSTPLTSVNSTTATS-ASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPS 522
Query: 500 KNERAV-PITQTGSGPEGXLRSPLAEVESN 586
N +V P + S P S A S+
Sbjct: 523 YNTSSVLPTSSVSSTPLSSANSTTATSASS 552
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +2
Query: 314 QPTATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSNLRLSSDGVLTVIAPRTPA 493
QPT S + + + GR+S+A+S SSR T + SN+ +S L I P+
Sbjct: 539 QPTRRSRTPIRSLSGRSSVASSRNSSR---------TRSYSNVSSASSNSLISIISSKPS 589
Query: 494 ATKNERAVP 520
++ +R P
Sbjct: 590 SSTVQRQTP 598
>SPBC19C2.13c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 366
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +1
Query: 139 DDLLTAVITPTMSRDYYR-PWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEIS 306
D + I ++S++Y + P+K + A + T ++ ++N D + F+PE IS
Sbjct: 107 DSAVAKTIEESISKNYPKCPFKVIGEAELLNRTIATDSRGNIEINADNEKFNPEVIS 163
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 109 DQDFG--LALTPDDLLTAVITPTMSR--DYYRPWKQMAMANRDVGSTITSNKDKFQVNLD 276
D FG + L+P +T ++ ++R DY + + +N D T+T ++N +
Sbjct: 229 DTYFGTVIKLSPSVNVTQLVVAMLNRLTDYVQREYESDSSNEDESETVTEKLGDIKINEE 288
Query: 277 VQHFSPEE 300
VQ +E
Sbjct: 289 VQQKDEQE 296
>SPAC20G8.04c |||mitochondrial electron transfer
flavoprotein-ubiquinone
oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 632
Score = 25.8 bits (54), Expect = 6.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 367 HGYISRQFTRRYALPENCNPDT 432
HG +S+ +R+ L NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290
>SPAC20H4.06c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.5
Identities = 7/18 (38%), Positives = 13/18 (72%)
Frame = -1
Query: 509 ARSSWQPESWERSRSARR 456
++ WQP+SW+ SR+ +
Sbjct: 70 SKEGWQPKSWKSSRNENK 87
>SPCC338.11c |rrg1|uvi22|methyltransferase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 303
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/76 (21%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = +2
Query: 323 ATSSSKVSTRRGRTSMAT---SLVSSRGVTLCLKTATLTLSNLRLSSDGVLTVIAPRTPA 493
+T +++ R GR + T S GV++ L+ T+T + L + G +++ P
Sbjct: 70 STICERIAERSGRLAAPTRKREFSLSNGVSVVLREPTMTYNTLGFKTWGSAPLLSANLPK 129
Query: 494 ATKNERAVPITQTGSG 541
++ + G+G
Sbjct: 130 WEDLSNSINALELGAG 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,736,579
Number of Sequences: 5004
Number of extensions: 53030
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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