Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1277
(737 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0484 + 8805053-8805538 38 0.011
03_02_0483 - 8804021-8804485 38 0.011
03_02_0485 - 8808139-8808618 37 0.015
03_02_0478 + 8775892-8776377 36 0.025
01_01_0229 - 1943473-1943922 35 0.059
01_01_0231 + 1951047-1951499 33 0.24
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 33 0.24
09_06_0236 - 21781508-21783043,21783307-21783504 33 0.31
04_04_1568 - 34475707-34476822,34476894-34477083,34477330-344774... 31 0.95
03_02_0320 + 7437528-7437623,7437725-7437772,7438885-7438994,743... 29 2.9
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 29 3.9
01_01_0227 + 1933247-1933699 29 3.9
12_01_0946 + 9376037-9376318 29 5.1
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 29 5.1
08_02_0350 + 16123139-16124041 28 6.7
03_06_0123 - 31821915-31822094,31822187-31822324,31822413-318228... 28 6.7
05_06_0026 - 25024807-25025300,25025432-25025495,25025567-250256... 28 8.9
02_02_0077 - 6586638-6587165 28 8.9
>03_02_0484 + 8805053-8805538
Length = 161
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Frame = +1
Query: 274 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 429
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 430 TVESSV 447
+++S+
Sbjct: 130 QIKASM 135
>03_02_0483 - 8804021-8804485
Length = 154
Score = 37.5 bits (83), Expect = 0.011
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Frame = +1
Query: 274 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 429
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 63 DVPGLKKEEVKVEVEDGNVLQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 122
Query: 430 TVESSV 447
+++S+
Sbjct: 123 QIKASM 128
>03_02_0485 - 8808139-8808618
Length = 159
Score = 37.1 bits (82), Expect = 0.015
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Frame = +1
Query: 274 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 429
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 430 TVESSV 447
+++S+
Sbjct: 128 QIKASM 133
>03_02_0478 + 8775892-8776377
Length = 161
Score = 36.3 bits (80), Expect = 0.025
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 8/66 (12%)
Frame = +1
Query: 274 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 429
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 430 TVESSV 447
+++S+
Sbjct: 130 QIKASM 135
>01_01_0229 - 1943473-1943922
Length = 149
Score = 35.1 bits (77), Expect = 0.059
Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Frame = +1
Query: 208 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 372
A AN V T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 38 AFANARVDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 95
Query: 373 YISR---QFTRRYALPENCNPDTVESSV 447
+ R QF RR+ LPEN D V++S+
Sbjct: 96 RVERSSGQFMRRFRLPENAKVDQVKASM 123
>01_01_0231 + 1951047-1951499
Length = 150
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +1
Query: 208 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 372
A AN + T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 373 YISR---QFTRRYALPENCNPDTVESSV 447
+ R QF RR+ LPEN D V++ +
Sbjct: 97 RVERSSGQFMRRFRLPENAKVDQVKAGM 124
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 33.1 bits (72), Expect = 0.24
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Frame = +1
Query: 208 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHG 372
A AN + T F+ D+ EE+ V+ +G V+V + E++ D+
Sbjct: 39 AFANARIDWKETPESHVFKA--DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWH 96
Query: 373 YISR---QFTRRYALPENCNPDTVESSV 447
+ R QF RR+ LPEN D V++ +
Sbjct: 97 RVERSSGQFMRRFRLPENAKVDQVKAGL 124
>09_06_0236 - 21781508-21783043,21783307-21783504
Length = 577
Score = 32.7 bits (71), Expect = 0.31
Identities = 20/51 (39%), Positives = 29/51 (56%)
Frame = +2
Query: 371 ATSLVSSRGVTLCLKTATLTLSNLRLSSDGVLTVIAPRTPAATKNERAVPI 523
ATS + CL+ A L +L +S + V++VIAP TPA + AVP+
Sbjct: 37 ATSFTWRQTHHRCLRLAA-ALQSLAVSKNDVVSVIAPNTPALYEMHFAVPM 86
>04_04_1568 -
34475707-34476822,34476894-34477083,34477330-34477464,
34477571-34477668,34477789-34477979,34478784-34479286,
34480169-34481568,34481655-34481855
Length = 1277
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = +2
Query: 407 CLKTATLTLSNLRLSSDGVLTVIAPRTPAATKNERAVPIT 526
CL+ A+ +S+L +S V++V+ P PA + AVP++
Sbjct: 49 CLRLASALVSSLGISRGDVVSVLLPNVPAMYEMHFAVPMS 88
>03_02_0320 +
7437528-7437623,7437725-7437772,7438885-7438994,
7439651-7439735,7439839-7440115,7440296-7440454,
7440563-7440666,7440930-7441168,7441265-7441583,
7441665-7442069,7442157-7442294,7442376-7442555
Length = 719
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/46 (28%), Positives = 22/46 (47%)
Frame = +1
Query: 187 YRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADG 324
Y+ W++ AMA + + ++ VN D + SP + T DG
Sbjct: 214 YKKWERAAMAGVSLVADAAEELERNTVNADARMLSPSSSNACTVDG 259
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +3
Query: 615 VNQKSVSVC*FYLHSSCVLGRLIALSY 695
+ K V VC FYLH C G L S+
Sbjct: 427 IKPKVVKVCHFYLHGKCQQGNLCKFSH 453
>01_01_0227 + 1933247-1933699
Length = 150
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 334 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESSV 447
V+GK++ER S +F RR+ LP D V +S+
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM 124
>12_01_0946 + 9376037-9376318
Length = 93
Score = 28.7 bits (61), Expect = 5.1
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = +1
Query: 157 VITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGY 327
++T T S RPWK N D T T + + + +++ +P +I + GY
Sbjct: 2 IVTTTSSTTTTRPWKTPTRENHDNQHTPTRSHN---IQANIRQDTPPDIDFRDRHGY 55
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/95 (18%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Frame = +1
Query: 193 PWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDE-- 366
P + +A + + + + ++ D+ S EE+ V D +++ G+H++ + E
Sbjct: 122 PRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGA 181
Query: 367 ----HGYISRQ----FTRRYALPENCNPDTVESSV 447
G+ + + R ALP+ C+ V + +
Sbjct: 182 EGSGDGWWKERSVSSYDMRLALPDECDKSKVRAEL 216
>08_02_0350 + 16123139-16124041
Length = 300
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/48 (35%), Positives = 24/48 (50%)
Frame = +2
Query: 434 SNLRLSSDGVLTVIAPRTPAATKNERAVPITQTGSGPEGXLRSPLAEV 577
S + LSS G L +A + ++ A P+ TGS RSP+A V
Sbjct: 132 SRMSLSSIGGLAAVAGVVLPSLPDDGASPMRSTGSPSLAARRSPMASV 179
>03_06_0123 -
31821915-31822094,31822187-31822324,31822413-31822817,
31822897-31823212,31823305-31823543,31823800-31823903,
31823987-31824145,31824326-31824510,31825318-31825427,
31826900-31826947,31827047-31827241,31827354-31827422,
31829521-31829620,31829879-31829940
Length = 769
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 187 YRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTAD 321
Y+ W++ AMA + + ++ VN+D + SP +V T D
Sbjct: 265 YKKWERDAMAGVSLVADAAEELERNTVNVDARTLSPSSNNVCTVD 309
>05_06_0026 -
25024807-25025300,25025432-25025495,25025567-25025662,
25025719-25025929,25026616-25026690,25026820-25027037
Length = 385
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = -1
Query: 509 ARSSWQPESWERSRSARRQRTTEDS 435
A S WQP SW S+ R +DS
Sbjct: 286 AISQWQPRSWHCSKRQSNDRVIDDS 310
>02_02_0077 - 6586638-6587165
Length = 175
Score = 27.9 bits (59), Expect = 8.9
Identities = 31/115 (26%), Positives = 49/115 (42%), Gaps = 13/115 (11%)
Frame = +1
Query: 136 PDDLLTAVITPTMSRDYYRPWKQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKT 315
PD+L + PT R Y R + MA DV S + +D+ +P ++ V+
Sbjct: 25 PDELERQLNPPT--RAYVRDRRAMANTPMDVKELRASGA--LVLAVDMPGVAPADVRVEV 80
Query: 316 ADGYVIVEGKHEERQ----DEHG----YISRQ-----FTRRYALPENCNPDTVES 441
DG V+ R D+ G Y+ + F RR+ LPE+ + D V +
Sbjct: 81 EDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLPESADLDGVRA 135
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,613,053
Number of Sequences: 37544
Number of extensions: 390483
Number of successful extensions: 1333
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1333
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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