Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1277
(737 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 58 7e-09
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 52 4e-07
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 52 5e-07
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 6e-07
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 52 6e-07
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 50 2e-06
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 2e-06
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 49 5e-06
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 47 1e-05
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.32
SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0) 29 3.9
SB_15896| Best HMM Match : SH3_1 (HMM E-Value=0.00055) 29 5.2
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 9.1
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 58.0 bits (134), Expect = 7e-09
Identities = 27/66 (40%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Frame = +1
Query: 253 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 429
DK ++ LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ +
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96
Query: 430 TVESSV 447
TV S +
Sbjct: 97 TVSSRI 102
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 52.4 bits (120), Expect = 4e-07
Identities = 24/59 (40%), Positives = 37/59 (62%)
Frame = +1
Query: 271 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESSV 447
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V S +
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRI 69
Score = 44.4 bits (100), Expect = 1e-04
Identities = 20/64 (31%), Positives = 34/64 (53%)
Frame = +1
Query: 244 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 423
+ +DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP +
Sbjct: 93 AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVD 151
Query: 424 PDTV 435
D++
Sbjct: 152 MDSL 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 52.0 bits (119), Expect = 5e-07
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Frame = +1
Query: 253 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 429
DKFQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDES 62
Query: 430 TVESSV 447
++ + +
Sbjct: 63 SISTRI 68
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/80 (33%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Frame = +1
Query: 199 KQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 378
K+ A + + T + KF + LDV F PEE+ VK + V + E +EHG+
Sbjct: 80 KKSPPATTENKAPATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 137
Query: 379 -SRQFTRRYALPENCNPDTV 435
+RQF R + LP + DT+
Sbjct: 138 TARQFNRHFVLPREVDMDTL 157
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +1
Query: 244 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 420
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 421 NPDTVESSV 447
V++ +
Sbjct: 61 EASNVKTRI 69
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 208 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 387
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 388 FTRRYALPENCNPDTV 435
F R++ LP + D++
Sbjct: 141 FNRQFVLPREVDMDSL 156
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 51.6 bits (118), Expect = 6e-07
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 1/69 (1%)
Frame = +1
Query: 244 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 420
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 421 NPDTVESSV 447
V++ +
Sbjct: 61 EASNVKTRI 69
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 208 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 387
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 388 FTRRYALPENCNPDTV 435
F R++ LP + D++
Sbjct: 141 FNRQFVLPREVDMDSL 156
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 244 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 420
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 421 NPDTVESSV 447
V++ +
Sbjct: 61 EASNVKTRI 69
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Frame = +1
Query: 253 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 429
D+ ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 430 TVESSV 447
V++ +
Sbjct: 298 NVKTRI 303
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 208 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 387
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 388 FTRRYALPENCNPDTV 435
F R++ LP + D++
Sbjct: 141 FNRQFVLPREVDMDSL 156
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 208 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 387
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 316 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 374
Query: 388 FTRRYALPENCNPDTV 435
F R++ LP + D++
Sbjct: 375 FNRQFVLPREVDMDSL 390
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Frame = +1
Query: 244 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 420
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 421 NPDTVESSV 447
V++ +
Sbjct: 61 EASNVKTRI 69
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/76 (28%), Positives = 37/76 (48%)
Frame = +1
Query: 208 AMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ 387
A+ D G + DKF + +DV F P+ I V+ ++V HE + H Y +
Sbjct: 82 ALPGPDGGEEESKGDDKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMH 140
Query: 388 FTRRYALPENCNPDTV 435
F R++ LP + D++
Sbjct: 141 FNRQFVLPREVDMDSL 156
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 48.8 bits (111), Expect = 5e-06
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Frame = +1
Query: 238 ITSNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 414
+ +N++K ++ LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE
Sbjct: 1 MANNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPE 59
Query: 415 NCNPDTVESSV 447
V++ +
Sbjct: 60 GVEASNVKTRI 70
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/69 (31%), Positives = 36/69 (52%)
Frame = +1
Query: 229 GSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYAL 408
G+ S DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ L
Sbjct: 89 GAKKESKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFIL 147
Query: 409 PENCNPDTV 435
P + D++
Sbjct: 148 PREVDMDSL 156
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 47.2 bits (107), Expect = 1e-05
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Frame = +1
Query: 199 KQMAMANRDVGSTITSNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI 378
K+ A ++ S T + KF + LDV F PEE+ VK + V + E +EHG+
Sbjct: 8 KKAPPATKENQSAATKDDTKFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFF 65
Query: 379 -SRQFTRRYALPE 414
+RQF R + LP+
Sbjct: 66 TARQFNRHFVLPQ 78
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.32
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +1
Query: 343 KHEERQDEHGYISRQFTRRYAL 408
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_25009| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 641
Score = 29.5 bits (63), Expect = 3.0
Identities = 32/125 (25%), Positives = 49/125 (39%), Gaps = 6/125 (4%)
Frame = +2
Query: 296 KKSQ*RQPTATSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSN-LRLSSDGVLTV 472
K+ P S S V G T V A T+S+ L +++ V T
Sbjct: 509 KRQDIASPVQPSPSWVMVPSGSVMKTTVTVWETKFVTASNIAWSTISSPLPMTTVFVTTT 568
Query: 473 IAPRTPAATKNERAVPITQ-----TGSGPEGXLRSPLAEVESNETKQ*LSERCESKKCKR 637
+AP +PAA V IT+ + P +P A+ + E K+ +R S K+
Sbjct: 569 VAPLSPAAPLTPDTVSITKPVLVSASTDPASAPAAPTADEKEKEEKK-KEKRSVSPSMKK 627
Query: 638 VLILF 652
V+ F
Sbjct: 628 VIPSF 632
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +1
Query: 307 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 414
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_32754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5659
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 467 TVIAPRTPAATKN----ERAVPITQTGSGPEGXLRS 562
T +AP T A K+ VPIT+T +GPE L S
Sbjct: 1362 TTVAPDTTVAPKSTTLASTVVPITETAAGPETTLAS 1397
>SB_21044| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
Length = 1507
Score = 29.1 bits (62), Expect = 3.9
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 326 TSSSKVSTRRGRTSMATSLVSSRGVTLCLKTATLTLSNLRLSSDGV-LTVIAPRTPAATK 502
TS TR + +L +SRGVTL KT+ +S+ R +S G+ LT R+ T
Sbjct: 1092 TSRGVTLTRNTSHGVTLTLNTSRGVTLSSKTSR-GVSHTRNTSRGLSLTYNTSRSVTLTC 1150
Query: 503 N-ERAVPITQTGS 538
N R V +T+ S
Sbjct: 1151 NTSRGVTLTRNTS 1163
>SB_15896| Best HMM Match : SH3_1 (HMM E-Value=0.00055)
Length = 300
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -2
Query: 490 RSPGSDHGQHAVRGQPKIRQCQGCSFQAERNA 395
R+PG D G+ +VR QP +R + SF R +
Sbjct: 145 RAPGRDAGKKSVRAQPNVR--EAASFYRRRGS 174
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.9 bits (59), Expect = 9.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 62 CHCCHSSWDTNLTA--FAIRTS--GWRLLLTIS*R--PSSRQRCPEITTG 193
C CCH S+ ++ +A+ + G L+ R PS+R+RCP+ TG
Sbjct: 2062 CTCCHKSYHVGISCGDYALSKTEIGQEHLVEKWMREDPSNRKRCPKCRTG 2111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,167,340
Number of Sequences: 59808
Number of extensions: 428245
Number of successful extensions: 1391
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1360
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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