Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1277
         (737 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.42 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.42 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     25   0.98 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   4.0  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 635 AYTFLIHSVPRVIVLFRCSQLRPVGSLXLLPDRTRFE 525
           +Y+ +   V  ++ LF   Q+ P  +   L D+TRF+
Sbjct: 77  SYSSVSLQVANLLRLFHIPQISPASTAKALSDKTRFD 113


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.8 bits (54), Expect = 0.42
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -1

Query: 635 AYTFLIHSVPRVIVLFRCSQLRPVGSLXLLPDRTRFE 525
           +Y+ +   V  ++ LF   Q+ P  +   L D+TRF+
Sbjct: 167 SYSSVSLQVANLLRLFHIPQISPASTAKALSDKTRFD 203


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 24.6 bits (51), Expect = 0.98
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 9/75 (12%)
 Frame = +3

Query: 51  KYKNVTAAIHPGIPT*PPSRSGLRAGAYS*RSPDGRHHAN---------DVQRLLPAVEA 203
           +++ V A++ P  P  P   S     AY+    D   H           D + LLP V  
Sbjct: 170 QFQTVVASMDPPEPPVPTVTSACVGSAYTPLKEDHDDHYGVPTLEELGFDTEGLLPPVWV 229

Query: 204 DGDGQ*RRRFHHHLE 248
            G+ +   R   HLE
Sbjct: 230 GGESEALARLERHLE 244


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = -1

Query: 575 LRPVGSLXLLPDRTRFE*WEQLARSSWQPESWERSRSARRQRTTEDSTVSG 423
           LRP   +     RTR + +  L   + Q ++W   R A     T  STV G
Sbjct: 125 LRPPQEVISHYRRTRRDRYTNLGLVNEQGQTWHDLRVALTSELTAASTVLG 175


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,129
Number of Sequences: 438
Number of extensions: 3705
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)