Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1275
(620 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855489-1|ABH88176.1| 122|Tribolium castaneum chemosensory pro... 25 0.68
AJ973444-1|CAJ01491.1| 122|Tribolium castaneum hypothetical pro... 25 0.68
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ... 23 2.1
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ... 23 2.1
AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head orthol... 22 4.8
S78567-1|AAB34900.1| 141|Tribolium castaneum GABA receptor subu... 21 8.3
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ... 21 8.3
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ... 21 8.3
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ... 21 8.3
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ... 21 8.3
AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone recepto... 21 8.3
AJ850294-1|CAH64514.1| 539|Tribolium castaneum putative esteras... 21 8.3
>DQ855489-1|ABH88176.1| 122|Tribolium castaneum chemosensory
protein 2 protein.
Length = 122
Score = 24.6 bits (51), Expect = 0.68
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +3
Query: 138 DRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGAT 317
D ++++ A++H +R N + ++ G + AIL D + D T C +
Sbjct: 26 DNVDID-AILHNKRLFDNYLQCLLKKGKCNEEAAILRDVIPDALITGCRKCNDHQKVSVE 84
Query: 318 KVYAIL 335
KV L
Sbjct: 85 KVIRFL 90
>AJ973444-1|CAJ01491.1| 122|Tribolium castaneum hypothetical
protein protein.
Length = 122
Score = 24.6 bits (51), Expect = 0.68
Identities = 16/66 (24%), Positives = 29/66 (43%)
Frame = +3
Query: 138 DRLNVEFALIHKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGAT 317
D ++++ A++H +R N + ++ G + AIL D + D T C +
Sbjct: 26 DNVDID-AILHNKRLFDNYLQCLLKKGKCNEEAAILRDVIPDALITGCRKCNDHQKVSVE 84
Query: 318 KVYAIL 335
KV L
Sbjct: 85 KVIRFL 90
>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
protein.
Length = 1464
Score = 23.0 bits (47), Expect = 2.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 430 CLSWGIVFVTTTASKQALLIL 368
CL +G+++ T S LL++
Sbjct: 1001 CLKYGVIYYVTVPSMYLLLVI 1021
>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
protein.
Length = 1464
Score = 23.0 bits (47), Expect = 2.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Frame = -2
Query: 430 CLSWGIVFVTTTASKQALLIL 368
CL +G+++ T S LL++
Sbjct: 1001 CLKYGVIYYVTVPSMYLLLVI 1021
>AF217810-1|AAF71998.1| 431|Tribolium castaneum fork head
orthologue protein.
Length = 431
Score = 21.8 bits (44), Expect = 4.8
Identities = 8/21 (38%), Positives = 12/21 (57%)
Frame = -1
Query: 167 DQSKFNIQTIRNRCHPFSTTS 105
+ S + + NRCHP S +S
Sbjct: 321 NMSHEELSAMVNRCHPLSLSS 341
>S78567-1|AAB34900.1| 141|Tribolium castaneum GABA receptor subunit
protein.
Length = 141
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = -2
Query: 181 FLSLWIKANSTFKRSAIDVT 122
++S W+ N+T R A+ VT
Sbjct: 86 WVSFWLNRNATPARVALGVT 105
>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
variant 2 protein.
Length = 1558
Score = 21.0 bits (42), Expect = 8.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 454 CIFGHSCMCLSWGIVFVTTTASKQALLIL 368
C+ C+ GI+++ + S LLIL
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYLLLIL 1048
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 554 FVFYFLLILGLRF 592
FVF+F LIL ++F
Sbjct: 1330 FVFFFALILVIQF 1342
>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
variant 1 protein.
Length = 1558
Score = 21.0 bits (42), Expect = 8.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 454 CIFGHSCMCLSWGIVFVTTTASKQALLIL 368
C+ C+ GI+++ + S LLIL
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYLLLIL 1048
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 554 FVFYFLLILGLRF 592
FVF+F LIL ++F
Sbjct: 1330 FVFFFALILVIQF 1342
>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
protein.
Length = 1558
Score = 21.0 bits (42), Expect = 8.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 454 CIFGHSCMCLSWGIVFVTTTASKQALLIL 368
C+ C+ GI+++ + S LLIL
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYLLLIL 1048
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 554 FVFYFLLILGLRF 592
FVF+F LIL ++F
Sbjct: 1330 FVFFFALILVIQF 1342
>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
protein.
Length = 1558
Score = 21.0 bits (42), Expect = 8.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = -2
Query: 454 CIFGHSCMCLSWGIVFVTTTASKQALLIL 368
C+ C+ GI+++ + S LLIL
Sbjct: 1020 CLHPQEFWCIVPGIIYLLSIPSMYLLLIL 1048
Score = 21.0 bits (42), Expect = 8.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 554 FVFYFLLILGLRF 592
FVF+F LIL ++F
Sbjct: 1330 FVFFFALILVIQF 1342
>AM295015-1|CAL25730.1| 549|Tribolium castaneum ecdysone receptor
(isoform A) protein.
Length = 549
Score = 21.0 bits (42), Expect = 8.3
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1
Query: 451 YNALTCQ*C 477
YNALTC+ C
Sbjct: 200 YNALTCEGC 208
>AJ850294-1|CAH64514.1| 539|Tribolium castaneum putative esterase
protein.
Length = 539
Score = 21.0 bits (42), Expect = 8.3
Identities = 9/35 (25%), Positives = 16/35 (45%)
Frame = -2
Query: 271 PQVSAMSSTKMAVLSLTSPTSTIEATSLAFFLSLW 167
PQV ++ + L + +P+ TS+ S W
Sbjct: 493 PQVPKNATDNLTYLRIGAPSDVTVETSIRSTASFW 527
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,434
Number of Sequences: 336
Number of extensions: 3835
Number of successful extensions: 24
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15875032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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