Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1275
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 219 3e-58
SPBC3D6.06c |||ribose-phosphate pyrophosphokinase |Schizosacchar... 175 4e-45
SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase Prs1|Schizo... 84 1e-17
SPCC1223.08c |dfr1||dihydrofolate reductase Dfr1|Schizosaccharom... 27 2.2
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 27 2.9
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 26 3.8
SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyce... 26 5.1
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 26 5.1
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 5.1
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s... 25 6.7
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 6.7
SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 6.7
SPBC56F2.12 |ilv5||acetohydroxyacid reductoisomerase|Schizosacch... 25 8.8
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 219 bits (534), Expect = 3e-58
Identities = 105/170 (61%), Positives = 136/170 (80%), Gaps = 1/170 (0%)
Frame = +3
Query: 3 FDIPVDNLFAEPAVLKWIKENIPDW-KTSIVVSPDAGGAKRVTSIADRLNVEFALIHKER 179
F++PVDNL+AEP+VL++I+ENI +++VSPDAGGAKR T++ADRL+++FALIHKER
Sbjct: 140 FNVPVDNLYAEPSVLRYIRENIDTTVNPTVIVSPDAGGAKRATALADRLDLDFALIHKER 199
Query: 180 KKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGP 359
+KANEV+ MVLVGDV+D+ AILVDDMADTCGT+ AA+ L + GA VYAI+THGI SG
Sbjct: 200 QKANEVSRMVLVGDVRDKLAILVDDMADTCGTLGLAAKTLKDNGAKAVYAIVTHGILSGK 259
Query: 360 AISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAVRRTHNG 509
AI IN + LE V+VTNTIP + C KI+ ID+S +LAE +RR H+G
Sbjct: 260 AIKVINESALEKVIVTNTIPHDDKRSLCSKIETIDISGVLAECIRRIHHG 309
>SPBC3D6.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 341
Score = 175 bits (426), Expect = 4e-45
Identities = 85/169 (50%), Positives = 118/169 (69%)
Frame = +3
Query: 3 FDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERK 182
FDIPVDNLF P + +I NIP++ +++VSPDAGGAKR T+IAD L ++FALIHK R+
Sbjct: 162 FDIPVDNLFGRPLLKHYISLNIPNYHNAVIVSPDAGGAKRATAIADALGLDFALIHKNRR 221
Query: 183 KANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGPA 362
S++LVGDV+++ AIL+DD+ DT T+ AAE + E GA+K+YA++TH + SG A
Sbjct: 222 HEYGT-SLMLVGDVQNKVAILIDDLIDTAYTLVRAAEFVKEHGASKIYALVTHCVLSGDA 280
Query: 363 ISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAVRRTHNG 509
I R+ +C++ ++VTNT PQ C IDV+ AEA+RR HNG
Sbjct: 281 IERVKLSCIDKLIVTNTAPQTITPSGC--FDIIDVAPTFAEAIRRIHNG 327
>SPAC4A8.14 |prs1||ribose-phosphate pyrophosphokinase
Prs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 84.2 bits (199), Expect = 1e-17
Identities = 34/63 (53%), Positives = 52/63 (82%)
Frame = +3
Query: 3 FDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERK 182
F PVDNL+AEP + +WI+ N+ DW+ ++VVS + GGAKRVTS+AD LN++FALI+ +R+
Sbjct: 138 FTRPVDNLYAEPNIAEWIRRNVDDWEEAVVVSKNPGGAKRVTSLADTLNLDFALINTDRQ 197
Query: 183 KAN 191
+++
Sbjct: 198 RSS 200
Score = 84.2 bits (199), Expect = 1e-17
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 3/105 (2%)
Frame = +3
Query: 204 MVLVGDVKDRTAILVDDMADTCGTICHAAEKLIE-AGATKVYAILTHGIFSGPAISRINN 380
+ LVGDV +TA+L+DD + A+E L++ GA +V I THGIF + + +
Sbjct: 294 ITLVGDVNGKTALLIDDTIENPTAFIVASEHLVKRCGAKRVIVIGTHGIFQNKCLKDLQS 353
Query: 381 A-CLEAVVVTNTIP-QERHMQECPKIQCIDVSMMLAEAVRRTHNG 509
+E +VVTNT P + + + EC K+ ID+S +LAEA+RRTHNG
Sbjct: 354 CEYIEQIVVTNTYPIKPQAVLECDKLTVIDISGVLAEAIRRTHNG 398
>SPCC1223.08c |dfr1||dihydrofolate reductase
Dfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 461
Score = 27.1 bits (57), Expect = 2.2
Identities = 15/58 (25%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = +3
Query: 6 DIPVDNLFA-EPAVLK-WIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHK 173
+ P D+ F EPA W+++ P+ + + + + G K +S + + +EF L K
Sbjct: 390 EYPCDSFFPFEPAESSDWVRKAHPELEKFVGIPVEEGRLKAASSNKEEVEIEFELYGK 447
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 26.6 bits (56), Expect = 2.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +3
Query: 45 LKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRL 146
+ W KE I K S++ PD+ K + ++AD++
Sbjct: 340 ITWAKEYIKKAKDSLLCLPDSPARKALFALADKV 373
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Frame = +3
Query: 354 GPAISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAVRR-THNG 509
GP I R+ C + TI E +EC + I +L V + HNG
Sbjct: 169 GPMIQRMQMTCPDCNGAGETIRDEDRCKECDGAKVISQRKILTVHVEKGMHNG 221
>SPBC409.04c |mis12||kinetochore protein Mis12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 259
Score = 25.8 bits (54), Expect = 5.1
Identities = 26/115 (22%), Positives = 52/115 (45%), Gaps = 16/115 (13%)
Frame = +3
Query: 21 NLFAEPAVLK-WIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFAL-------IHKE 176
N+F+ P LK +++ D SI DA + + A++L V+ L + ++
Sbjct: 78 NIFSYPPELKGYMRTFGKDVDYSITTEQDAAMDQAIQEAAEKLVVKMQLRRDLRMRLSRK 137
Query: 177 RKKANEVASMV----LVGDVKDRTAILV----DDMADTCGTICHAAEKLIEAGAT 317
R+K E+ + + V + + + D + D G + HA ++++EA T
Sbjct: 138 REKKTEIEKHLERISFLNKVPENWQVTLPETTDFLLDQLGNLQHAVKRVVEASPT 192
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.8 bits (54), Expect = 5.1
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -2
Query: 310 PASINFSAAWQIVPQVSAMSSTKMAVLSLTS 218
PAS N S+ I PQVSA ++ A S TS
Sbjct: 535 PASGNASSVSAIPPQVSAQTTIPAASTSATS 565
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +3
Query: 165 IHKERKKANEVASMVLVGDVKDRTAILVDDMADTC 269
++K+ KK N + +V DVK R D D C
Sbjct: 1 MNKKDKKFNYIFGSEIVNDVKKRLPYYKSDWIDAC 35
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 25.4 bits (53), Expect = 6.7
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -2
Query: 262 SAMSSTKMAVLSLTSPTSTIEATSLAFFLSLWIKANSTFKRSAIDVTLLAPPASGDTT 89
S+ SS+ ++ S TSP S+ TSL S ++S S+ TL + ++ T+
Sbjct: 59 SSSSSSPLSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTS 116
>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/49 (28%), Positives = 21/49 (42%)
Frame = -1
Query: 368 GYCRSRKNTMSQNSIHFSSTSFYQFFGSMANRATSVGHVVY*NGSSVFN 222
G C T S+ F++ Q FG + S + V NG S+F+
Sbjct: 275 GVCNRLSQTPLMRSVIFTNNYDCQTFGQVLELLQSTIYAVDTNGQSIFH 323
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.4 bits (53), Expect = 6.7
Identities = 20/109 (18%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Frame = -2
Query: 454 CIFGHSCMCLSWGIVFVTTTASKQALLILDIAGPEKIP*V-KIAYTLVAPAS--INFSAA 284
C HS + + A +ALL +++ E + + +T + + S
Sbjct: 507 CFVAHSLQGEDTSMAILDFVAQDKALLTMNVTRQEAADALHSVGFTAEMQENPVASLSGG 566
Query: 283 WQIVPQVSAMSSTKMAVLSLTSPTSTIEATSLAFFLSLWIKANSTFKRS 137
W++ +++ K +L L PT+ ++ ++A W++A T +++
Sbjct: 567 WKMKLELARAMLQKADILLLDEPTNHLDVANIA-----WLEAYLTSQKN 610
>SPAC1B3.15c |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 628
Score = 25.4 bits (53), Expect = 6.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 517 QIPPLCVRLTASASIIDTSMHCIFGHSCMCLSWGIVFVT 401
QI + L ++A +H ++G+ M L WG+V T
Sbjct: 302 QISSVATSLLSAAFQKMDGLHGLYGYQWMFLIWGVVAFT 340
>SPBC56F2.12 |ilv5||acetohydroxyacid
reductoisomerase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -2
Query: 133 IDVTLLAPPASGDTTMLVFQSG 68
+DV L+AP SG T +F+ G
Sbjct: 196 VDVILVAPKGSGRTVRTLFKEG 217
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,677
Number of Sequences: 5004
Number of extensions: 58016
Number of successful extensions: 177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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