Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-1275
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 127 6e-30
02_01_0219 - 1437685-1437723,1437932-1438091,1438385-1438514,143... 76 2e-14
01_06_0553 + 30173964-30174349,30175124-30175439,30175523-301756... 50 1e-06
02_05_0511 + 29644266-29644399,29644502-29644913,29645007-296450... 38 0.006
05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435... 36 0.026
12_02_0962 + 24854731-24854830,24854966-24855076,24855332-248554... 32 0.42
01_03_0197 + 13700225-13700278,13701178-13702422 29 2.3
04_04_0185 - 23403479-23403868,23404018-23404023 29 3.0
03_04_0140 + 17638335-17638583,17638843-17639061,17639206-176394... 29 3.9
07_03_0402 - 17734494-17734550,17736775-17736819,17738333-177383... 28 5.2
04_04_0427 + 25137036-25137119,25137687-25137826,25139775-251398... 28 5.2
02_02_0374 + 9538478-9540385 28 5.2
01_06_1806 + 40012952-40016836 28 6.9
09_06_0269 - 21947847-21947904,21947988-21948169,21948268-219489... 27 9.1
04_04_0622 + 26663471-26663620,26663822-26664384,26664483-266646... 27 9.1
04_01_0359 + 4711289-4713052,4713423-4713950 27 9.1
03_05_0677 + 26663880-26664581 27 9.1
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175... 27 9.1
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 127 bits (307), Expect = 6e-30
Identities = 69/172 (40%), Positives = 100/172 (58%), Gaps = 2/172 (1%)
Frame = +3
Query: 3 FDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLN-VEFALIHKER 179
FDIPVD++ +P +L ++ K +VVSPD GG R + A +L+ A++ K R
Sbjct: 224 FDIPVDHIHGQPVILDYLASKTIS-KDLVVVSPDVGGVVRARAFAKKLSDAPLAIVDKRR 282
Query: 180 KKANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGP 359
+ N M L+GDVK + AI+VDDM DT GTI AA L + GA VYA TH +FS P
Sbjct: 283 QGHNMSEVMHLIGDVKGKVAIMVDDMIDTAGTITSAAALLKQEGAEAVYACSTHAVFSPP 342
Query: 360 AISRINNACLEAVVVTNTIPQERHMQEC-PKIQCIDVSMMLAEAVRRTHNGG 512
AI R++ E V+VTN+I H +C P++ + ++ ++AE + H G
Sbjct: 343 AIERLSGGIFEEVIVTNSILLPEH--KCFPQLTVLSMANLVAETIWHVHRDG 392
>02_01_0219 -
1437685-1437723,1437932-1438091,1438385-1438514,
1438627-1438696,1439264-1439407,1439771-1439837,
1439970-1440019,1440386-1440559,1440881-1440934,
1441008-1441112
Length = 330
Score = 76.2 bits (179), Expect = 2e-14
Identities = 42/117 (35%), Positives = 66/117 (56%), Gaps = 16/117 (13%)
Frame = +3
Query: 204 MVLVGDVKDRTAILVDDMADTC----------------GTICHAAEKLIEAGATKVYAIL 335
M L+GDV+ + A+++DDM DT GTI AE L + GA +VYA
Sbjct: 200 MNLIGDVRGKVAVMMDDMIDTADISLPNINILMKPIKLGTIAKGAELLHQEGAREVYACC 259
Query: 336 THGIFSGPAISRINNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAVRRTHN 506
TH +FS PAI R+++ + V++TNTIP + + P++ + V+ +L E + R H+
Sbjct: 260 THAVFSPPAIERLSSGLFQEVIITNTIPLKED-KSFPQLTILSVANLLGETIWRVHD 315
>01_06_0553 +
30173964-30174349,30175124-30175439,30175523-30175618,
30175710-30175778,30175878-30176006,30176165-30176264,
30177321-30177454
Length = 409
Score = 50.0 bits (114), Expect = 1e-06
Identities = 31/103 (30%), Positives = 49/103 (47%)
Frame = +3
Query: 42 VLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGD 221
+LK + +PD + PD G KR + + +K R+ + + GD
Sbjct: 253 LLKSRLQELPDSDNITIAFPDDGAWKRFYKQLQHFPM--VVCNKVREGEQRIVR-IKEGD 309
Query: 222 VKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIF 350
+ R ++VDD+ + GT+ + L E GA KV A +THGIF
Sbjct: 310 PRGRHVVIVDDLVQSGGTLIECQKVLAEHGAAKVSAYVTHGIF 352
>02_05_0511 +
29644266-29644399,29644502-29644913,29645007-29645075,
29645169-29645333,29645771-29645870,29645906-29646081
Length = 351
Score = 37.9 bits (84), Expect = 0.006
Identities = 26/124 (20%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Frame = +3
Query: 36 PAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNV---------EFALIHKERKKA 188
P +L+ +++ +PD + PD G KR + + ++ ++ + ++
Sbjct: 168 PLLLQRLRQ-LPDADNITIAFPDDGAWKRFHKLLLNFPMTPSFYFGLFDYKVVCAKVREG 226
Query: 189 NEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGPAIS 368
++ + G+ + R ++VDD+ + GT+ + L GA KV A +TH +F +
Sbjct: 227 DKRIVRIKEGNPEGRHVVIVDDLVQSGGTLRECQKVLAAHGAAKVSAYVTHAVFPKQSYE 286
Query: 369 RINN 380
R +
Sbjct: 287 RFTH 290
>05_05_0080 -
22243175-22243226,22243342-22243389,22243485-22243540,
22243752-22243819,22244712-22244773,22245166-22245214,
22245818-22245899,22245987-22246064,22246441-22246499,
22246727-22246805,22246946-22247218
Length = 301
Score = 35.9 bits (79), Expect = 0.026
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 240 ILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGPAISRINNACLEAVVVTNTIP 419
++VD M T GTI A + L+E G T + + + PA+ +++N V T TI
Sbjct: 219 LVVDPMLATGGTIVAAIDLLVERGVTSKQIKVVSAVAAPPALQKLSNKFPGLHVYTGTID 278
Query: 420 QE 425
E
Sbjct: 279 SE 280
>12_02_0962 +
24854731-24854830,24854966-24855076,24855332-24855424,
24855538-24855687,24855934-24855992,24856081-24856134
Length = 188
Score = 31.9 bits (69), Expect = 0.42
Identities = 29/93 (31%), Positives = 43/93 (46%), Gaps = 13/93 (13%)
Frame = +3
Query: 84 SIVVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASM------------VLVGDVK 227
++V +A G +IA + +F + K RK EV S + +G V+
Sbjct: 67 TLVAGIEARGFFFAPTIALEVGAKFVPLRKPRKLPGEVISEEYSLEYGTDKIEMQIGAVE 126
Query: 228 DRT-AILVDDMADTCGTICHAAEKLIEAGATKV 323
AI+VDD+ T GT+C A + L AGA V
Sbjct: 127 PNDRAIIVDDLIATGGTLCAAVKLLERAGAEVV 159
>01_03_0197 + 13700225-13700278,13701178-13702422
Length = 432
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 204 MVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGP 359
++LVG V D DD D +C+ AE L+ A + +A++ I + P
Sbjct: 240 VMLVGTVPDPAMASTDDQGDRSAKVCYFAE-LLNATLSVAFAVVVVLITAAP 290
>04_04_0185 - 23403479-23403868,23404018-23404023
Length = 131
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 183 KANEVASMVLVGDVKDRTAILVDDMADTCGTIC 281
KA+ V SM + GD +DR ++ D + TC C
Sbjct: 26 KADGVISMAITGDDRDRLEVVGDGVDVTCLVTC 58
>03_04_0140 + 17638335-17638583,17638843-17639061,17639206-17639443,
17640614-17640809,17640888-17640942,17641495-17641645,
17642501-17642809,17642950-17643215,17643311-17644237,
17644386-17644712
Length = 978
Score = 28.7 bits (61), Expect = 3.9
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Frame = +3
Query: 54 IKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHK--ERKKANEVASMVLVGDVK 227
+++ I D K + VSP G + + S+ N + + ++ NE+A +L GD K
Sbjct: 874 VQKRIADRKIKLEVSP--GAVEFLGSLGYDPNYGARPVKRVIQQYVENELAKGILRGDFK 931
Query: 228 DRTAILVD 251
D +ILVD
Sbjct: 932 DEDSILVD 939
>07_03_0402 -
17734494-17734550,17736775-17736819,17738333-17738391,
17739128-17739277,17741868-17741960,17742589-17742598
Length = 137
Score = 28.3 bits (60), Expect = 5.2
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +3
Query: 237 AILVDDMADTCGTICHAAEKLIEAGATKV 323
A++VDD+ T GT+C A L AGA V
Sbjct: 64 ALVVDDLVATGGTLCAAIVLLERAGAEVV 92
>04_04_0427 +
25137036-25137119,25137687-25137826,25139775-25139846,
25141160-25141470,25141595-25141705,25143548-25143640,
25144063-25144212,25145062-25145120,25145636-25145693,
25146351-25146622
Length = 449
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 240 ILVDDMADTCGTICHAAEKLIEAGATKV 323
++VDD+ T GT+C A + L AGA V
Sbjct: 301 VVVDDLVATGGTLCAAIKLLERAGADVV 328
>02_02_0374 + 9538478-9540385
Length = 635
Score = 28.3 bits (60), Expect = 5.2
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -2
Query: 205 IEATSLAFF--LSLWIKANSTFKRSAIDVTLLAPPASGDTTMLV 80
IEA FF +S IKA +T +A L APP+S TT L+
Sbjct: 27 IEANRSKFFEEMSASIKATTTVLTAASHPPLQAPPSSTPTTCLM 70
>01_06_1806 + 40012952-40016836
Length = 1294
Score = 27.9 bits (59), Expect = 6.9
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = -1
Query: 431 VPLLGYCVCDNNSF 390
VPLLGYCVC + F
Sbjct: 1060 VPLLGYCVCGDERF 1073
>09_06_0269 -
21947847-21947904,21947988-21948169,21948268-21948963,
21949378-21950021,21950441-21950543,21950618-21950812,
21951308-21951931
Length = 833
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = +3
Query: 210 LVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKV 323
+V +KD +++ D DTCGT+ A + GA V
Sbjct: 100 IVKRLKDADSVVRDACVDTCGTLALCARGYGDGGAALV 137
>04_04_0622 +
26663471-26663620,26663822-26664384,26664483-26664675,
26664801-26664865,26665182-26665398,26665485-26665823
Length = 508
Score = 27.5 bits (58), Expect = 9.1
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 36 PAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKER 179
PA +WI E++ W+ + + GA R R+ V +H R
Sbjct: 111 PAYFRWIHEDLRPWRDAGITREAVDGAARRYGAKFRVTVVAGRLHVAR 158
>04_01_0359 + 4711289-4713052,4713423-4713950
Length = 763
Score = 27.5 bits (58), Expect = 9.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 318 KVYAILTHGIFSGPAISRINNACLEAVVVTNTIPQERHMQE 440
+V+ I+ H + G I R N CL V T +ERH Q+
Sbjct: 491 RVFHIVLHMV--GTLIQRCNAGCLSLYVNTYNEKEERHNQD 529
>03_05_0677 + 26663880-26664581
Length = 233
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +2
Query: 122 GDIYCGSFEC*ICFD-PQREKEGQ*SSLYGACW*C 223
GD GSFEC ICF+ PQ L+ CW C
Sbjct: 15 GDAAGGSFECNICFELPQEPIVTLCGHLF--CWPC 47
>02_01_0266 -
1758439-1758599,1758682-1758769,1759363-1759564,
1759664-1759800,1760169-1760268,1760350-1760522,
1760797-1760941,1761018-1761139,1761225-1761470,
1761962-1762182,1762278-1762338,1762409-1762487,
1762572-1762651,1763221-1763292,1763382-1763449,
1763550-1763588,1763828-1763903,1763992-1764006
Length = 694
Score = 27.5 bits (58), Expect = 9.1
Identities = 34/154 (22%), Positives = 62/154 (40%), Gaps = 5/154 (3%)
Frame = +3
Query: 84 SIVVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLV--GDVKDRTAILVDDM 257
S + S + +K +++A + N ++ + K+R + E DV L DD+
Sbjct: 428 SYIESRKSESSKLESALAKKHN-DYNDLRKQRDELQEERKSFWKEEADVTAEIDRLKDDL 486
Query: 258 ADTCGTICHAAEKLIEAGATKVYAILT-HGIFS--GPAISRINNACLEAVVVTNTIPQER 428
++ HA I G V I+ HGI GP + ++ C E +
Sbjct: 487 VKAQKSLDHATPGDIRRGLNSVSRIIRDHGITGVFGPVLELVD--CEEKFFTAVEVTAGN 544
Query: 429 HMQECPKIQCIDVSMMLAEAVRRTHNGGICFIPL 530
+ ++ D+S + + + R G + FIPL
Sbjct: 545 SLFHVV-VENDDISTRIIQVLTREKGGRVTFIPL 577
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,566,148
Number of Sequences: 37544
Number of extensions: 373241
Number of successful extensions: 1105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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