Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1275
         (620 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)         174   6e-44
SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)         103   1e-35
SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)              62   4e-10
SB_33227| Best HMM Match : DEP (HMM E-Value=0.042)                     31   0.75 
SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)           29   2.3  
SB_56028| Best HMM Match : Pyridox_oxidase (HMM E-Value=1.7)           29   3.0  
SB_30369| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)                 29   4.0  
SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.3  

>SB_16635| Best HMM Match : Pribosyltran (HMM E-Value=7.1e-17)
          Length = 227

 Score =  174 bits (423), Expect = 6e-44
 Identities = 82/98 (83%), Positives = 89/98 (90%)
 Frame = +3

Query: 3   FDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERK 182
           FDIPVDNL+AEPAVLKWIKEN+ DW+ S++VSPDAGGAKRVTSIAD LN  FALIHKERK
Sbjct: 98  FDIPVDNLYAEPAVLKWIKENVHDWQNSVIVSPDAGGAKRVTSIADHLNCGFALIHKERK 157

Query: 183 KANEVASMVLVGDVKDRTAILVDDMADTCGTICHAAEK 296
            ANEVASMVLVGDVKDRTAILVDD+ADTCGT+  AA K
Sbjct: 158 VANEVASMVLVGDVKDRTAILVDDIADTCGTLTLAATK 195


>SB_48574| Best HMM Match : Pribosyltran (HMM E-Value=2.5e-18)
          Length = 270

 Score =  103 bits (248), Expect(2) = 1e-35
 Identities = 51/106 (48%), Positives = 68/106 (64%)
 Frame = +3

Query: 192 EVASMVLVGDVKDRTAILVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGPAISR 371
           E   M +VGDV  + AI+VDDM D   T   AA  L + GA K+Y ++THG+ SG A   
Sbjct: 151 EKPPMNVVGDVGGKIAIIVDDMIDDATTFVDAARLLRDRGAYKIYVMVTHGLLSGSAPEL 210

Query: 372 INNACLEAVVVTNTIPQERHMQECPKIQCIDVSMMLAEAVRRTHNG 509
           I  + ++ VVVTNT+P +  +  C KI+ ID+S +LAEAVRR HNG
Sbjct: 211 IEGSEIDEVVVTNTVPHDSKVARCSKIKTIDISQLLAEAVRRIHNG 256



 Score = 64.1 bits (149), Expect(2) = 1e-35
 Identities = 26/62 (41%), Positives = 45/62 (72%)
 Frame = +3

Query: 3   FDIPVDNLFAEPAVLKWIKENIPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERK 182
           +DIPVDNL A P ++ +I E++PD + +++V+ +   A+R TS A+RL +  A+IH E+K
Sbjct: 51  YDIPVDNLRASPFIVHYINESVPDCRNAVIVAKNPASAQRATSFAERLRLGIAVIHGEQK 110

Query: 183 KA 188
           ++
Sbjct: 111 ES 112


>SB_32706| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 36/97 (37%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
 Frame = +3

Query: 9   IPVDNLFAEPAVLKWIKENIP-DWKTSIVVSPDAGG---AKRVTSIADRLNVE---FALI 167
           +PVDNL A    + +  E      K  +V+SPDAGG   AK   ++   + V+    A+I
Sbjct: 39  VPVDNLEANLVAMNYFVEQKKFPLKDIVVISPDAGGVARAKNFQALLQSVGVKDSSLAMI 98

Query: 168 HKERKKANEVASMVLVGDVKDRTAILVDDMADTCGTI 278
            K+R+ A ++ SM +VG+V  + AI++DD+ DT GT+
Sbjct: 99  IKQRQGAGQIGSMHMVGNVAGKQAIIIDDIIDTAGTL 135


>SB_33227| Best HMM Match : DEP (HMM E-Value=0.042)
          Length = 765

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = -2

Query: 304 SINFSAAWQIVPQVSAMSSTKMAVLSLTSPTSTIEATSLAFFLSLWIKANSTFKRSAIDV 125
           ++ F + WQ  P+      T+       +PT+T    S A F  +W +   +     +D+
Sbjct: 414 NLGFLSPWQRTPKKKQAQDTEELETHQETPTTTKIDVSGASFKEVWFEVTLSNLLKLLDI 473

Query: 124 TLLAP---PASGDTTM 86
           + L P   PAS  T++
Sbjct: 474 SFLEPILQPASMKTSL 489


>SB_18329| Best HMM Match : AMP-binding (HMM E-Value=2.7e-18)
          Length = 1076

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 243  LVDDMADTCGTICHAAEKLIEAGATKVYAILTHG-IFSGPAISRINNACLEAVV 401
            LV D+   CG +         +GA  ++++ T G IFS P ++R  + C EA+V
Sbjct: 953  LVTDVGVVCGCVDGYLYAFDLSGAP-LWSLATSGPIFSSPVLARRRSLCQEAIV 1005


>SB_56028| Best HMM Match : Pyridox_oxidase (HMM E-Value=1.7)
          Length = 695

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/58 (37%), Positives = 32/58 (55%)
 Frame = +3

Query: 66  IPDWKTSIVVSPDAGGAKRVTSIADRLNVEFALIHKERKKANEVASMVLVGDVKDRTA 239
           I D +T ++V    G  K VT+ A  ++V+  L     K   +V ++VLVGD KD TA
Sbjct: 217 IVDVRTLVLV----GDTKDVTATAS-MDVDVDLFVAMEKFIVDVRTLVLVGDTKDVTA 269


>SB_30369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 371 SGYCRSRKNTMSQNSIHFSSTSFYQFFGSMANRATSVGHV 252
           SG+CR+  + +   S +  S  FY   G  +++++ VGH+
Sbjct: 618 SGFCRALYDEVIAGSGYTISADFYNVRGRSSSQSSGVGHL 657


>SB_11120| Best HMM Match : DUF1080 (HMM E-Value=0.082)
          Length = 748

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -1

Query: 371 SGYCRSRKNTMSQNSIHFSSTSFYQFFGSMANRATSVGHV 252
           SG+CR+  + +   S +  S  FY   G  +++++ VGH+
Sbjct: 599 SGFCRALYDEVIAGSGYTISADFYNVRGRSSSQSSGVGHL 638


>SB_52865| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = -1

Query: 497 TSDSLCQHH*HVNALYFWTFLHVPLLGYCVCDNNSF*TSIVNSGYCRS 354
           T    C  H    +   W   HVP  G+CV D+  + TS   SG C++
Sbjct: 504 TCPGSCSVHDTCKSCLAWGVNHVPHCGWCVQDSLCYPTS-SPSGACKA 550


>SB_36681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1081

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -2

Query: 277 IVPQVSAMSSTKMAVLSLTSPTSTIEATSLAFFLSLWIKANSTFKRSAID-VTLLAPPAS 101
           + P  + + ++ +   S   PTST+E TS     S  +  ++    S ++  T++AP   
Sbjct: 149 VEPTSTVVPTSTVVPTSTVEPTSTVEPTSTVVPTSTVVPTSTVEPTSTVEPTTMMAPTTE 208

Query: 100 GDTT 89
             T+
Sbjct: 209 SPTS 212


>SB_37927| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1032

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -2

Query: 172 LWIKANSTFKRSAIDVTLLAPPASGDTTMLVFQSGMFSLIHFNTAGSAKRLST 14
           LW+K N     +   VTL +  +   T +L    G +S +  N AGSA  ++T
Sbjct: 457 LWLKDNQAVDTN--HVTLHSNGSLSITRVLFSDRGSYSCVATNVAGSASSVAT 507


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,441,749
Number of Sequences: 59808
Number of extensions: 446651
Number of successful extensions: 1185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1179
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)