Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1275
         (620 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    24   4.5  
AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA methy...    23   5.9  
AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase...    23   5.9  
AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase...    23   5.9  
EF426168-1|ABO26411.1|  155|Anopheles gambiae unknown protein.         23   7.8  
AY843205-1|AAX14774.1|  478|Anopheles gambiae odorant receptor O...    23   7.8  
AY363726-1|AAR14939.1|  331|Anopheles gambiae seven transmembran...    23   7.8  
AY363725-1|AAR14938.1|  478|Anopheles gambiae seven transmembran...    23   7.8  

>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.8 bits (49), Expect = 4.5
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = +3

Query: 243 LVDDMADTCGTICHAAEKLIEAGATKVYAILTHGIFSGPAISRINNACLEA 395
           LVD M D C  +   A  +++     VY       +  P I  + N C+ A
Sbjct: 284 LVDAMVDACDIVMQRAPNVLQHQHRDVY-------WWAPVIEELRNECIAA 327


>AF532982-1|AAQ10289.1|  459|Anopheles gambiae putative RNA
           methylase protein.
          Length = 459

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 353 RKNTMSQNSIHFSSTSFYQ 297
           R   M+++++H+ STS YQ
Sbjct: 329 RATAMTEDAVHYPSTSPYQ 347


>AF063021-3|AAC16247.1|  484|Anopheles gambiae dopa decarboxylase
           isoform 2 protein.
          Length = 484

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 45  LKWIKENIPDWKTSIVVSPDAG 110
           +K +KE  PDW  + +VS   G
Sbjct: 171 MKRVKEEHPDWDDNTIVSKLVG 192


>AF063021-2|AAC16249.1|  515|Anopheles gambiae dopa decarboxylase
           isoform 1 protein.
          Length = 515

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 45  LKWIKENIPDWKTSIVVSPDAG 110
           +K +KE  PDW  + +VS   G
Sbjct: 202 MKRVKEEHPDWDDNTIVSKLVG 223


>EF426168-1|ABO26411.1|  155|Anopheles gambiae unknown protein.
          Length = 155

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +3

Query: 279 CHAAEKLIEAGATKVYAILTHGIFSGPAISR--INNACL 389
           C A  +L+E  +    +I+ H +F  PA SR  +  AC+
Sbjct: 41  CQAGAQLVECTSASQMSIMGHSLFL-PAESRQQLEPACV 78


>AY843205-1|AAX14774.1|  478|Anopheles gambiae odorant receptor
           Or83b protein.
          Length = 478

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 277 IVPQVSAMSSTKMAVLSLTSPTSTIEATSLAF 182
           +V  VSA+  T    L L   TSTI+ T LA+
Sbjct: 340 VVRLVSAIGDTYGPALLLHMLTSTIKLTLLAY 371


>AY363726-1|AAR14939.1|  331|Anopheles gambiae seven transmembrane G
           protein-coupledreceptor protein.
          Length = 331

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 277 IVPQVSAMSSTKMAVLSLTSPTSTIEATSLAF 182
           +V  VSA+  T    L L   TSTI+ T LA+
Sbjct: 193 VVRLVSAIGDTYGPALLLHMLTSTIKLTLLAY 224


>AY363725-1|AAR14938.1|  478|Anopheles gambiae seven transmembrane G
           protein-coupledreceptor protein.
          Length = 478

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = -2

Query: 277 IVPQVSAMSSTKMAVLSLTSPTSTIEATSLAF 182
           +V  VSA+  T    L L   TSTI+ T LA+
Sbjct: 340 VVRLVSAIGDTYGPALLLHMLTSTIKLTLLAY 371


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,183
Number of Sequences: 2352
Number of extensions: 14848
Number of successful extensions: 30
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)