Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1275
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.4  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.2  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   4.2  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   9.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.7  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   9.7  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.7  
AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    21   9.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     21   9.7  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 227 RQNCHFSRRHGRHLWHDL 280
           R  C  SRR+GRH  H L
Sbjct: 48  RGQCISSRRNGRHNVHSL 65


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -2

Query: 268 QVSAMSSTKMAVLSLTSPTSTIEATSLAFFLS 173
           Q   +   + AVL LT+P++ + A +L   LS
Sbjct: 62  QTLNLKHLRAAVLVLTNPSNEVVAVALGALLS 93


>AF388659-2|AAK71994.1|  463|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform B
          protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +2

Query: 35 TRSVKMDQRKHTGLEN 82
          +RS+ MDQ K   +EN
Sbjct: 2  SRSINMDQEKKNNVEN 17


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 181 FLSLWIKANSTFKRSAIDVT 122
           ++S W+  N+T  R A+ VT
Sbjct: 239 WVSFWLNRNATPARVALGVT 258


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 181 FLSLWIKANSTFKRSAIDVT 122
           ++S W+  N+T  R A+ VT
Sbjct: 239 WVSFWLNRNATPARVALGVT 258


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = +1

Query: 568 FTYLRVKVFQQCYWLLA 618
           F  LR+K+   CY+ ++
Sbjct: 312 FEQLRIKILGDCYYCIS 328



 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 242 NGSSVFNITNKHHRGYFI 189
           NG+ ++NI   H   YF+
Sbjct: 753 NGALIYNILPPHVAAYFL 770


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 181 FLSLWIKANSTFKRSAIDVT 122
           ++S W+  N+T  R A+ VT
Sbjct: 178 WVSFWLNRNATPARVALGVT 197


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = +1

Query: 451 YNALTCQ*C 477
           YNALTC+ C
Sbjct: 199 YNALTCEGC 207


>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 282 GKSCHKCR 259
           G SCHKC+
Sbjct: 40  GDSCHKCK 47


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 499 HTMGESVSYLFSNVPY*LF 555
           HT+    +  +SNVPY LF
Sbjct: 208 HTLDRFHNDKYSNVPYFLF 226


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,680
Number of Sequences: 438
Number of extensions: 4096
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)