Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1274
         (700 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q307B3 Cluster: Cytosine-specific methyltransferase; n=...    38   0.31 
UniRef50_UPI00006CD00B Cluster: hypothetical protein TTHERM_0018...    36   1.3  
UniRef50_Q9ZUJ1 Cluster: T2K10.7 protein; n=1; Arabidopsis thali...    35   1.7  
UniRef50_A2EIA2 Cluster: SMC family, C-terminal domain containin...    34   3.9  
UniRef50_Q5CK71 Cluster: Putative uncharacterized protein; n=2; ...    33   6.7  

>UniRef50_Q307B3 Cluster: Cytosine-specific methyltransferase; n=1;
           Arthrospira platensis|Rep: Cytosine-specific
           methyltransferase - Spirulina platensis
          Length = 411

 Score = 37.5 bits (83), Expect = 0.31
 Identities = 19/50 (38%), Positives = 27/50 (54%)
 Frame = +3

Query: 363 KCIVINQRA*ITRFRDFILFHRFPFHYFILLCNSVIESLRSTWGGDICDA 512
           +CI I + A +  F D+  FHR  +H F  + N+VI  L    GG + DA
Sbjct: 316 RCITIREAARLHTFPDWFQFHRTIWHGFREIGNAVIPILAKQLGGSVIDA 365


>UniRef50_UPI00006CD00B Cluster: hypothetical protein
           TTHERM_00189370; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00189370 - Tetrahymena
           thermophila SB210
          Length = 1869

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 19/40 (47%), Positives = 27/40 (67%), Gaps = 4/40 (10%)
 Frame = -2

Query: 162 YTFISIQSEYVTYS----SIPHSVNDIKFNLNYNTGELSI 55
           Y F++ QSEY TYS    S+ + + +IKF L+YN+G  SI
Sbjct: 570 YAFLA-QSEYRTYSFQPMSLDYDITEIKFQLSYNSGFASI 608


>UniRef50_Q9ZUJ1 Cluster: T2K10.7 protein; n=1; Arabidopsis
           thaliana|Rep: T2K10.7 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 1194

 Score = 35.1 bits (77), Expect = 1.7
 Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
 Frame = -3

Query: 377 YYYALISH--RFAIEYPVSTKINFKRHYM*HKILIFLNFSLV*IIIFSFNNGKVSIKISL 204
           YY  ++ H  R++  YP+  K + K  +M  K L+   F    I ++S N G+    I+L
Sbjct: 501 YYLVIVDHYTRYSWFYPIKQKSHVKDVFMTFKALVANKFQRKIIHLYSDNGGEF---IAL 557

Query: 203 *RF-NSNRFFQYTTGIHLYLYNRNTSRIHRFL 111
             F +SN     TT  H   +N  + R HR +
Sbjct: 558 RSFLSSNGITHLTTPPHTPEHNGISERKHRHI 589


>UniRef50_A2EIA2 Cluster: SMC family, C-terminal domain containing
            protein; n=1; Trichomonas vaginalis G3|Rep: SMC family,
            C-terminal domain containing protein - Trichomonas
            vaginalis G3
          Length = 1095

 Score = 33.9 bits (74), Expect = 3.9
 Identities = 18/53 (33%), Positives = 33/53 (62%)
 Frame = -2

Query: 159  TFISIQSEYVTYSSIPHSVNDIKFNLNYNTGELSIRSQNEIQGASRAAGGRRS 1
            TF S+   +  Y SI  ++ D+K NLN  + E+S+  +N ++  S+ +GG++S
Sbjct: 954  TFESVSKHFNEYLSIITNL-DVKLNLNNESKEVSLLIEN-VENVSQLSGGQKS 1004


>UniRef50_Q5CK71 Cluster: Putative uncharacterized protein; n=2;
            Cryptosporidium|Rep: Putative uncharacterized protein -
            Cryptosporidium hominis
          Length = 2612

 Score = 33.1 bits (72), Expect = 6.7
 Identities = 22/70 (31%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
 Frame = -1

Query: 493  PHVLRNDSITLLHSKIK*WNGNRWNNIKSLNLVIQAR*FITMHLYPTVSPSNTPYQQRSI 314
            P ++   S +LL +KIK   GN W+N++ L  +  A    T ++    +PS    + ++I
Sbjct: 1850 PSIISKASESLLLAKIKFIGGNEWDNVQGLKFLSFAYFENTGYVQLKTTPSVYNLKDQAI 1909

Query: 313  SN-VITCSIK 287
             N +I  SIK
Sbjct: 1910 QNDLIAVSIK 1919


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 614,947,357
Number of Sequences: 1657284
Number of extensions: 11893434
Number of successful extensions: 21917
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 21172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21904
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 55371905986
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)