Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1274
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       24   1.0  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   9.7  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   9.7  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = -3

Query: 443 IMERKSMEQYKVSEPCYSGTLIYYYALISH 354
           ++E ++  +Y+V E    G ++  Y ++SH
Sbjct: 196 VVEGRNYRKYRVEERTSDGFIVGEYGVVSH 225


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +1

Query: 613 NILLTLNTRITRETFLSIYLIAPHKNL 693
           N +  LNT +   T L+  ++  H+NL
Sbjct: 189 NKISNLNTSLIHSTHLNGDIVKEHQNL 215


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 427 DFRSIILFYCVTVLLN 474
           + R I  FYCV++  N
Sbjct: 52  NLRRIYYFYCVSITFN 67


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,446
Number of Sequences: 336
Number of extensions: 3421
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)