Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1274
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.12c ||SPCC794.13|conserved fungal protein|Schizosaccharo...    27   2.0  
SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr 2|||...    26   4.5  
SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.5  
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub...    25   7.9  
SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter |Schizosacch...    25   7.9  

>SPCC553.12c ||SPCC794.13|conserved fungal
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 521

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = +2

Query: 80  FRLNFISLTL*GIDEYVTYSDCIDINVYLLCIEKNDYY*IFIGRSL 217
           FRLN +      +D YV Y   +  N Y+ C+  N     F+G SL
Sbjct: 383 FRLNVLMTK--SMDSYVVYRKNMGRNFYVKCVASNVSMLSFLGWSL 426


>SPBC25D12.06 |||RNA helicase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = -2

Query: 165 RYTFISIQSEYVTYSSIPHSVNDIKFNLNYNTGELSIRSQN 43
           + T  ++  E+V +++  HS+ D  F+ N +   L I +Q+
Sbjct: 365 KVTLTNLPYEFVRFNNSMHSIGDNNFSYNNSEAVLQIFAQS 405


>SPAC1782.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = +1

Query: 430 FRSIILFYCVTVLLNRCGVRGEVTFVTHSRLKIMI 534
           FR+I+LFYC  +     G      FV  S L  +I
Sbjct: 5   FRAIVLFYCCMLTFAGIGFLWNPKFVVESGLVALI 39


>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
           Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1129

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/43 (27%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -3

Query: 533 IIIFRRECVTNVTSPRT----PQRFNNTVTQ*NKIMERKSMEQ 417
           ++ FR+  + ++ SP T    P    NT+ + ++++ERK +E+
Sbjct: 540 LVYFRKSRLDHILSPVTAEDVPFHVRNTLDEEHRVVERKLLER 582


>SPAC977.10 |sod2||CPA1 sodium ion/proton antiporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 468

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +3

Query: 324 C*YGVFDGETVGYKCIVINQRA*ITRFRDFILFHRFPFHYFILLCNSV 467
           C +G+F G  +GY    I + A   R  D I ++  P     LLC+ +
Sbjct: 213 CAFGIFFGCVIGYLLSFILKHAQKYRLIDAISYYSLPL-AIPLLCSGI 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,693,793
Number of Sequences: 5004
Number of extensions: 54776
Number of successful extensions: 108
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)