Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1274
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0247 + 27851206-27851255,27851382-27851496,27852280-278524...    29   2.7  
05_07_0075 - 27513927-27514220,27514806-27515117,27515203-275153...    29   3.5  
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686...    28   6.2  
04_03_0811 - 19909128-19912214                                         28   8.2  

>01_06_0247 +
           27851206-27851255,27851382-27851496,27852280-27852468,
           27853698-27854057,27854138-27854201,27854365-27854504,
           27854610-27854918,27855135-27855389
          Length = 493

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 456 CNSVIESLRSTWGGDICDAFSPKN 527
           C  V  SL +TW GD C+ ++P N
Sbjct: 324 CGKVCLSLLNTWPGDGCEKWNPSN 347


>05_07_0075 -
           27513927-27514220,27514806-27515117,27515203-27515342,
           27515502-27515565,27515637-27516083,27516169-27516303,
           27517620-27517737,27517857-27517876
          Length = 509

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 456 CNSVIESLRSTWGGDICDAFSPKN 527
           C  V  SL +TW G  C+ +SP N
Sbjct: 326 CGKVCLSLLNTWSGSGCERWSPSN 349


>03_05_0026 +
           19966616-19966703,19967992-19968058,19968599-19968677,
           19969140-19969231,19969961-19970396,19973749-19974099
          Length = 370

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = -2

Query: 156 FISIQSEYVTYSSIPH-SVNDIKFNLNYNTGEL 61
           F+ IQ  YVT+S +PH SVND+   LN    +L
Sbjct: 140 FLKIQ--YVTFSMLPHESVNDMYGRLNVIVNDL 170


>04_03_0811 - 19909128-19912214
          Length = 1028

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 3    FAGRPPRATPLESHFVILYL--ILLCYNLG*ILYH*RCEESMNT*RIPIV 146
            +  R  R  P ES    L    IL CYNL  I Y   CE+ +N  ++PI+
Sbjct: 880  YCPRLERIVPRESALPSLTTLDILFCYNLKTIFYQHPCEQPINY-QLPIL 928


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,474,311
Number of Sequences: 37544
Number of extensions: 277703
Number of successful extensions: 417
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)