Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1274
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  

>SB_14952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 451

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 419 QYKVSEPCYSGTLIYYYALISHRFAIEYPVS-TKINFKRHY 300
           +Y+ S   YS T  Y Y+L++H F ++Y  S    +F R Y
Sbjct: 210 KYQYSLVTYSFTRKYQYSLVTHSFTMKYQYSLVTYSFTRKY 250



 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 419 QYKVSEPCYSGTLIYYYALISHRFAIEYPVS-TKINFKRHY 300
           +Y+ S   YS T  Y Y+L++H F  +Y  S  K +F + Y
Sbjct: 366 KYQYSLVTYSFTRKYQYSLVTHSFTRKYQYSLVKYSFTKKY 406



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 419 QYKVSEPCYSGTLIYYYALISHRFAIEYPVS-TKINFKRHY 300
           +Y+ S   YS T  Y Y+L++H F  +Y  S    +F R Y
Sbjct: 41  KYQYSLVTYSFTRKYQYSLVTHSFTRKYQYSLVTYSFTRKY 81



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = -3

Query: 419 QYKVSEPCYSGTLIYYYALISHRFA--IEYPVSTKINFKRHY 300
           +Y+ S   YS T  Y Y+L++H F    +YP+ T  +F R Y
Sbjct: 171 KYQYSLVTYSFTRKYQYSLVTHSFTRKYQYPLVT-YSFTRKY 211



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 419 QYKVSEPCYSGTLIYYYALISHRFAIEYPVS-TKINFKRHY 300
           +Y+ S   YS T  Y Y+L++H F  +Y  S    +F R Y
Sbjct: 288 KYQYSLVTYSFTKKYQYSLVTHSFTRKYQYSLVTYSFTRKY 328



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 419 QYKVSEPCYSGTLIYYYALISHRFAIEYPVS-TKINFKRHY 300
           +Y+ S   YS T  Y Y+L++H F  +Y  S    +F R Y
Sbjct: 327 KYQYSLVTYSFTKKYQYSLVTHSFTRKYQYSLVTYSFTRKY 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,160,614
Number of Sequences: 59808
Number of extensions: 364372
Number of successful extensions: 616
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)