Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-1274
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   8.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   8.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.5  

>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/29 (24%), Positives = 16/29 (55%)
 Frame = -1

Query: 376 ITMHLYPTVSPSNTPYQQRSISNVITCSI 290
           ++  + PT    N P+++  + N+ T +I
Sbjct: 81  VSTTIVPTTQEINKPFKRLELFNITTTTI 109


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/30 (33%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 393 ITRFRDFILFHRFPFHY-FILLCNSVIESL 479
           + R   FIL H FP  Y ++L  ++ I+ +
Sbjct: 357 VKRRISFILVHGFPLEYEYVLAVSNRIQKV 386


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 21  RATPLESHFVILYLILLCY 77
           RA+  E  +V+L  ILLCY
Sbjct: 688 RASGRELSYVLLSGILLCY 706


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,588
Number of Sequences: 438
Number of extensions: 4026
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)